Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R [S] T  U  V  W  X  Y  Z 

Package 205/233HostnameOS / ArchBUILDCHECKBUILD BIN
sigPathway 1.6.0
Weil Lai
Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008)
Last Changed Rev: 27709 / Revision: 30966
Last Changed Date: 2007-10-02 17:41:09 -0700 (Tue, 02 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64 [ OK ] OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: sigPathway
Version: 1.6.0
Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD build sigPathway
StartedAt: 2008-04-09 17:10:07 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 17:11:18 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 71.2 seconds
RetCode: 0
Status: OK
PackageFile: sigPathway_1.6.0.tar.gz
PackageFileSize: 905.1 KiB

Command output

* checking for file 'sigPathway/DESCRIPTION' ... OK
* preparing 'sigPathway':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in D:/biocbld/bbs-2.1-bioc/tmpdir/Rinst515245050

---------- Making package sigPathway ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making calc_gene_set_internal.d from calc_gene_set_internal.c
making calc_gene_set_stat.d from calc_gene_set_stat.c
making calc_probe_stat.d from calc_probe_stat.c
making calc_weights.d from calc_weights.c
making matrix_fn.d from matrix_fn.c
making permute.d from permute.c
making shuffle.d from shuffle.c
making sigPathway.d from sigPathway.c
gcc-sjlj  -std=gnu99  -Id:/biocbld/bbs-2.1-bioc/R/include     -O3 -Wall  -c calc_gene_set_internal.c -o calc_gene_set_internal.o
gcc-sjlj  -std=gnu99  -Id:/biocbld/bbs-2.1-bioc/R/include     -O3 -Wall  -c calc_gene_set_stat.c -o calc_gene_set_stat.o
gcc-sjlj  -std=gnu99  -Id:/biocbld/bbs-2.1-bioc/R/include     -O3 -Wall  -c calc_probe_stat.c -o calc_probe_stat.o
gcc-sjlj  -std=gnu99  -Id:/biocbld/bbs-2.1-bioc/R/include     -O3 -Wall  -c calc_weights.c -o calc_weights.o
gcc-sjlj  -std=gnu99  -Id:/biocbld/bbs-2.1-bioc/R/include     -O3 -Wall  -c matrix_fn.c -o matrix_fn.o
gcc-sjlj  -std=gnu99  -Id:/biocbld/bbs-2.1-bioc/R/include     -O3 -Wall  -c permute.c -o permute.o
gcc-sjlj  -std=gnu99  -Id:/biocbld/bbs-2.1-bioc/R/include     -O3 -Wall  -c shuffle.c -o shuffle.o
gcc-sjlj  -std=gnu99  -Id:/biocbld/bbs-2.1-bioc/R/include     -O3 -Wall  -c sigPathway.c -o sigPathway.o
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I d:/biocbld/bbs-2.1-bioc/R/include  -i sigPathway_res.rc -o sigPathway_res.o
gcc-sjlj  -std=gnu99  -shared -s  -o sigPathway.dll sigPathway.def calc_gene_set_internal.o calc_gene_set_stat.o calc_probe_stat.o calc_weights.o matrix_fn.o permute.o shuffle.o sigPathway.o sigPathway_res.o  -Ld:/biocbld/bbs-2.1-bioc/R/bin -Ld:/biocbld/bbs-2.1-bioc/R/bin -lRlapack -Ld:/biocbld/bbs-2.1-bioc/R/bin -lRblas -lgfortran   -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'sigPathway'
     Formats: text html latex example chm 
  MuscleExample                     text    html    latex           chm
  calcTNullFast                     text    html    latex           chm
  calcTStatFast                     text    html    latex   example chm
  calculate.GSEA                    text    html    latex           chm
  calculate.NGSk                    text    html    latex   example chm
  calculatePathwayStatistics        text    html    latex   example chm
  estimateNumPerm                   text    html    latex   example chm
  getPathwayStatistics.NGSk         text    html    latex           chm
  getPathwayStatistics              text    html    latex           chm
  importGeneSets                    text    html    latex           chm
  rankPathways.NGSk                 text    html    latex           chm
  rankPathways                      text    html    latex           chm
  runSigPathway                     text    html    latex   example chm
  selectGeneSets                    text    html    latex           chm
  writeSigPathway                   text    html    latex           chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.

HHC4016: Warning: Cannot open "c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".

Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\bbs-2.1-bioc\meat\sigPathway\chm\sigPathway.chm

HHC4016: Warning: Cannot open "c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".

The following files were not compiled:

  preparing package sigPathway for lazy loading
  adding MD5 sums

* DONE (sigPathway)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
    file 'sigPathway/src/Makevars' had non-LF line endings
* checking for empty or unneeded directories
* building 'sigPathway_1.6.0.tar.gz'