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Package 183/233HostnameOS / ArchBUILDCHECKBUILD BIN
rflowcyt 1.10.1
N. LeMeur
Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/rflowcyt
Last Changed Rev: 30489 / Revision: 30966
Last Changed Date: 2008-03-12 21:36:55 -0700 (Wed, 12 Mar 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64 [ OK ] OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: rflowcyt
Version: 1.10.1
Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD build rflowcyt
StartedAt: 2008-04-09 16:29:37 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 16:36:45 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 428.2 seconds
RetCode: 0
Status: OK
PackageFile: rflowcyt_1.10.1.tar.gz
PackageFileSize: 3.969 MiB

Command output

* checking for file 'rflowcyt/DESCRIPTION' ... OK
* preparing 'rflowcyt':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
installing R.css in D:/biocbld/bbs-2.1-bioc/tmpdir/Rinst545644894


---------- Making package rflowcyt ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'rflowcyt'
     Formats: text html latex example chm 
  ContourScatterPlot                text    html    latex   example chm
  FCS-class                         text    html    latex   example chm
  FCSgate-class                     text    html    latex   example chm
  FCSggobi-class                    text    html    latex   example chm
  FCSmetadata-class                 text    html    latex   example chm
  FCSsummary-class                  text    html    latex   example chm
  FHCRC.HVTNFCS                     text    html    latex   example chm
  ImageParCoord                     text    html    latex   example chm
  KS.flowcytest                     text    html    latex   example chm
  MODE                              text    html    latex   example chm
  PercentPos.FCS                    text    html    latex   example chm
  ProbBin.FCS                       text    html    latex   example chm
  ProbBin.flowcytest                text    html    latex   example chm
  ROC.FCS                           text    html    latex   example chm
  VRC.HVTNFCS                       text    html    latex   example chm
  WLR.flowcytest                    text    html    latex   example chm
  add.parallel.coordinates          text    html    latex   example chm
  add.parallelCoordinates           text    html    latex   example chm
  addParameter-methods              text    html    latex           chm
  boxplot.FCS                       text    html    latex   example chm
  breakpoints.ProbBin               text    html    latex   example chm
  checkvars-methods                 text    html    latex           chm
  coerce-FCSformat                  text    html    latex   example chm
  coerce-methods                    text    html    latex           chm
  convertS3toS4                     text    html    latex   example chm
  createGate                        text    html    latex   example chm
  cytoSet-class                     text    html    latex   example chm
  dim.FCS-methods                   text    html    latex           chm
  emp.f                             text    html    latex   example chm
  equals-methods                    text    html    latex           chm
  extractGateHistory                text    html    latex   example chm
  extractGatedData                  text    html    latex   example chm
  fcs.type                          text    html    latex   example chm
  fixvars-methods                   text    html    latex           chm
  fluors-methods                    text    html    latex           chm
  gate.IPC                          text    html    latex   example chm
  get.h                             text    html    latex   example chm
  get.num.modes                     text    html    latex   example chm
  get.p                             text    html    latex   example chm
  ggobi-methods                     text    html    latex           chm
  legend.CSP                        text    html    latex   example chm
  make.grid                         text    html    latex   example chm
  metaData-methods                  text    html    latex           chm
  pairs.CSP                         text    html    latex   example chm
  parallelCoordinates               text    html    latex   example chm
  pkci2.flowcytest                  text    html    latex   example chm
  plot-methods                      text    html    latex           chm
  plot.ProbBin.FCS                  text    html    latex   example chm
  plot2sets.FCS                     text    html    latex   example chm
  plotECDF.FCS                      text    html    latex   example chm
  plotQA.FCS                        text    html    latex   example chm
  plotdensity.FCS                   text    html    latex   example chm
  plotvar.FCS                       text    html    latex   example chm
  print-methods                     text    html    latex           chm
  read.FCS                          text    html    latex   example chm
  read.series.FCS                   text    html    latex   example chm
  rect.box.idx                      text    html    latex   example chm
  rflowcyt-defunct                  text    html    latex           chm
  runflowcytests                    text    html    latex   example chm
  show-methods                      text    html    latex           chm
  showgate.FCS                      text    html    latex   example chm
  standard                          text    html    latex   example chm
  subset-methods                    text    html    latex           chm
  subset2-methods                   text    html    latex           chm
  subset2assign-methods             text    html    latex           chm
  subsetassign-methods              text    html    latex           chm
  summary-methods                   text    html    latex           chm
  summary.ProbBin.FCS               text    html    latex   example chm
  xgobi.FCS                         text    html    latex   example chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.

HHC4016: Warning: Cannot open "51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".

Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\bbs-2.1-bioc\meat\rflowcyt\chm\rflowcyt.chm



HHC4016: Warning: Cannot open "51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".





The following files were not compiled:

  preparing package rflowcyt for lazy loading
Loading required package: survival
Loading required package: splines
Loading required package: xtable
Loading required package: KernSmooth
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Loading required package: MASS
Loading required package: grid
Loading required package: hexbin
Loading required package: lattice
Loading required package: rfcdmin
Loading required package: fields
Loading required package: spam

Attaching package: 'spam'


	The following object(s) are masked from package:xtable :

	 display 

Loading required package: locfit
Loading required package: akima
Loading required package: splancs
Loading required package: sp
Loading required package: prada
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: RColorBrewer
Loading required package: rrcov
Loading required package: robustbase

Attaching package: 'robustbase'


	The following object(s) are masked from package:survival :

	 heart 


Attaching package: 'rrcov'


	The following object(s) are masked from package:stats :

	 biplot,
	 predict,
	 screeplot 

Loading required package: xgobi
  adding MD5 sums

* DONE (rflowcyt)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'rflowcyt_1.10.1.tar.gz'