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Package 180/233HostnameOS / ArchBUILDCHECKBUILD BIN
reb 1.12.0
Karl J. Dykema
Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/reb
Last Changed Rev: 27709 / Revision: 30966
Last Changed Date: 2007-10-02 17:41:09 -0700 (Tue, 02 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64 [ OK ] OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: reb
Version: 1.12.0
Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD build reb
StartedAt: 2008-04-09 16:54:14 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 16:55:44 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 89.2 seconds
RetCode: 0
Status: OK
PackageFile: reb_1.12.0.tar.gz
PackageFileSize: 620 KiB

Command output

* checking for file 'reb/DESCRIPTION' ... OK
* preparing 'reb':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in D:/biocbld/bbs-2.1-bioc/tmpdir/Rinst547200680


---------- Making package reb ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making movbin.d from movbin.c
gcc-sjlj  -std=gnu99  -Id:/biocbld/bbs-2.1-bioc/R/include     -O3 -Wall  -c movbin.c -o movbin.o
movbin.c: In function 'bcount':
movbin.c:37: warning: suggest parentheses around comparison in operand of &
movbin.c: In function 'bscore':
movbin.c:48: warning: implicit declaration of function 'sqrt'
movbin.c:48: warning: incompatible implicit declaration of built-in function 'sqrt'
movbin.c: In function 'mean':
movbin.c:63: warning: suggest parentheses around comparison in operand of &
movbin.c: In function 'mspan_mov_binom_mx':
movbin.c:128: warning: unused variable 'im_mx'
movbin.c: In function 'mspan_mov_binom':
movbin.c:145: warning: unused variable 'c'
movbin.c:145: warning: unused variable 'r'
movbin.c: In function 'main':
movbin.c:168: warning: unused variable 'nr'
movbin.c:166: warning: unused variable 'rlen'
movbin.c:163: warning: unused variable 'range'
movbin.c:162: warning: unused variable 'sum_mx'
movbin.c:162: warning: unused variable 'sum_vec'
movbin.c:161: warning: unused variable 'im_mx'
movbin.c:161: warning: unused variable 'im_vec'
movbin.c:160: warning: unused variable 'gx2'
movbin.c:158: warning: unused variable 'data'
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I d:/biocbld/bbs-2.1-bioc/R/include  -i reb_res.rc -o reb_res.o
gcc-sjlj  -std=gnu99  -shared -s  -o reb.dll reb.def movbin.o reb_res.o  -Ld:/biocbld/bbs-2.1-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
Note: unmatched right brace in 'regmap' on or after line 15
Note: unmatched right brace in 'regmap.Rd' on or after line 15
 >>> Building/Updating help pages for package 'reb'
     Formats: text html latex example chm 
  Hs.arms                           text    html    latex           chm
  absMax                            text    html    latex   example chm
  buildChromCytoband                text    html    latex   example chm
  buildChromMap                     text    html    latex   example chm
  cset2band                         text    html    latex   example chm
  fromRevIsh                        text    html    latex   example chm
  isAbnormal                        text    html    latex   example chm
  mcr.eset                          text    html    latex   example chm
  movbin                            text    html    latex   example chm
  movt                              text    html    latex   example chm
  naMean                            text    html    latex   example chm
  regmap                            text    html    latex   example chm
  revish                            text    html    latex   example chm
  rmAmbigMappings                   text    html    latex   example chm
  smoothByRegion                    text    html    latex   example chm
  summarizeByRegion                 text    html    latex   example chm
  tBinomTest                        text    html    latex   example chm
  writeGFF3                         text    html    latex   example chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.

HHC4016: Warning: Cannot open "ava\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".

Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\bbs-2.1-bioc\meat\reb\chm\reb.chm



HHC4016: Warning: Cannot open "ava\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".





The following files were not compiled:

  adding MD5 sums

* DONE (reb)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'reb_1.12.0.tar.gz'