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Package 79/233HostnameOS / ArchBUILDCHECKBUILD BIN
geneplotter 1.16.0
Biocore Team c/o BioC user list
Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/geneplotter
Last Changed Rev: 27709 / Revision: 30966
Last Changed Date: 2007-10-02 17:41:09 -0700 (Tue, 02 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: geneplotter
Version: 1.16.0
Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check geneplotter_1.16.0.tar.gz
StartedAt: 2008-04-09 19:24:16 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 19:28:14 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 238.4 seconds
RetCode: 0
Status: OK
CheckDir: geneplotter.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.1-bioc/meat/geneplotter.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'geneplotter/DESCRIPTION' ... OK
* this is package 'geneplotter' version '1.16.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'geneplotter' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating geneplotter-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating geneplotter-manual.tex ... OK
* checking geneplotter-manual.tex ... OK

geneplotter.Rcheck/00install.out:

installing R.css in D:/biocbld/bbs-2.1-bioc/meat/geneplotter.Rcheck


---------- Making package geneplotter ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  installing data files
  preparing package geneplotter for lazy loading
Loading required package: annotate
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: xtable
Loading required package: lattice
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'geneplotter'
     Formats: text html latex example chm 
  GetColor                          text    html    latex   example chm
  Makesense                         text    html    latex   example chm
  alongChrom                        text    html    latex   example chm
  amplicon.plot                     text    html    latex   example chm
  cColor                            text    html    latex   example chm
  cPlot                             text    html    latex   example chm
  cScale                            text    html    latex   example chm
  classes                           text    html    latex           chm
  eset133a                          text    html    latex   example chm
  histStack                         text    html    latex   example chm
  identifyLines                     text    html    latex   example chm
  imageMap                          text    html    latex   example chm
  make.chromOrd                     text    html    latex   example chm
  multiecdf                         text    html    latex   example chm
  openHtmlPage                      text    html    latex   example chm
  panel.smoothScatter               text    html    latex   example chm
  plotChr                           text    html    latex   example chm
  plotExpressionGraph               text    html    latex   example chm
  savepng                           text    html    latex   example chm
  smoothscatter                     text    html    latex   example chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.
HHC4016: Warning: Cannot open "\Program Files\Windows Resource Kits\Tools\;c:\Program Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\bbs-2.1-bioc\meat\geneplotter.Rcheck\00_pkg_src\geneplotter\chm\geneplotter.chm

HHC4016: Warning: Cannot open "\Program Files\Windows Resource Kits\Tools\;c:\Program Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".


The following files were not compiled:
  adding MD5 sums

* DONE (geneplotter)