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Package 30/233HostnameOS / ArchBUILDCHECKBUILD BIN
bgx 1.2.2
Ernest Turro
Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008)
Last Changed Rev: 29287 / Revision: 30966
Last Changed Date: 2007-12-20 14:53:35 -0800 (Thu, 20 Dec 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64 [ OK ] OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: bgx
Version: 1.2.2
Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD build bgx
StartedAt: 2008-04-09 17:32:24 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 17:37:22 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 298.5 seconds
RetCode: 0
Status: OK
PackageFile: bgx_1.2.2.tar.gz
PackageFileSize: 2.141 MiB

Command output

* checking for file 'bgx/DESCRIPTION' ... OK
* preparing 'bgx':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking whether 'INDEX' is up-to-date ... NO
* use '--force' to overwrite the existing 'INDEX'
* installing the package to re-build vignettes
installing R.css in D:/biocbld/bbs-2.1-bioc/tmpdir/Rinst556401547

---------- Making package bgx ------------
Untarring Boost header files...
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making qnorm.d from qnorm.c
making bgx.d from
making bgx_frontend.d from
making rundir.d from
making sokal.d from
gcc-sjlj  -std=gnu99 -I ../boostIncl -Id:/biocbld/bbs-2.1-bioc/R/include   -DUSING_R -march=i486 -ffast-math -O3  -std=c99  -O3 -Wall  -c qnorm.c -o qnorm.o
g++-sjlj  -I ../boostIncl -Id:/biocbld/bbs-2.1-bioc/R/include   -DUSING_R -march=i486 -ffast-math -O3  -O2 -Wall  -c -o bgx.o
g++-sjlj  -I ../boostIncl -Id:/biocbld/bbs-2.1-bioc/R/include   -DUSING_R -march=i486 -ffast-math -O3  -O2 -Wall  -c -o bgx_frontend.o
g++-sjlj  -I ../boostIncl -Id:/biocbld/bbs-2.1-bioc/R/include   -DUSING_R -march=i486 -ffast-math -O3  -O2 -Wall  -c -o rundir.o
g++-sjlj  -I ../boostIncl -Id:/biocbld/bbs-2.1-bioc/R/include   -DUSING_R -march=i486 -ffast-math -O3  -O2 -Wall  -c -o sokal.o
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I d:/biocbld/bbs-2.1-bioc/R/include  -i bgx_res.rc -o bgx_res.o
g++-sjlj   -shared -s  -o bgx.dll bgx.def qnorm.o bgx.o bgx_frontend.o rundir.o sokal.o bgx_res.o  -Ld:/biocbld/bbs-2.1-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'bgx'
     Formats: text html latex example chm 
  analysis.bgx                      text    html    latex   example chm
  bgx                               text    html    latex   example chm
  mcmc.bgx                          text    html    latex   example chm
  readOutput.bgx                    text    html    latex   example chm
  saveAffinityPlot.bgx              text    html    latex   example chm
  setupVars.bgx                     text    html    latex   example chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.

HHC4016: Warning: Cannot open "ava\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".

Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\bbs-2.1-bioc\meat\bgx\chm\bgx.chm

HHC4016: Warning: Cannot open "ava\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".

The following files were not compiled:

  preparing package bgx for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: affy
Loading required package: affyio
Loading required package: preprocessCore
Loading required package: gcrma
Loading required package: matchprobes
Loading required package: splines
  adding MD5 sums

* DONE (bgx)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'bgx_1.2.2.tar.gz'