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Package 25/233HostnameOS / ArchBUILDCHECKBUILD BIN
arrayQualityMetrics 1.2.1
Audrey Kauffmann
Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008)
Last Changed Rev: 29682 / Revision: 30966
Last Changed Date: 2008-01-25 02:03:07 -0800 (Fri, 25 Jan 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
lemming Windows Server 2003 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: arrayQualityMetrics
Version: 1.2.1
Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check arrayQualityMetrics_1.2.1.tar.gz
StartedAt: 2008-04-09 16:52:27 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 16:56:59 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 271.9 seconds
RetCode: 0
Status: OK
CheckDir: arrayQualityMetrics.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory 'E:/biocbld/bbs-2.1-bioc/meat/arrayQualityMetrics.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'arrayQualityMetrics/DESCRIPTION' ... OK
* this is package 'arrayQualityMetrics' version '1.2.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'arrayQualityMetrics' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
aqm.expressionset: no visible binding for global variable 'batext'
aqm.expressionset: no visible binding for global variable 'nfig2'
aqm.expressionset: no visible binding for global variable 'bapng'
makePlot: no visible global function definition for 'devDims'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating arrayQualityMetrics-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating arrayQualityMetrics-manual.tex ... OK
* checking arrayQualityMetrics-manual.tex ... OK


installing R.css in E:/biocbld/bbs-2.1-bioc/meat/arrayQualityMetrics.Rcheck

---------- Making package arrayQualityMetrics ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'arrayQualityMetrics'
     Formats: text html latex example chm 
  XYfromGAL                         text    html    latex           chm
  arrayQualityMetrics               text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.1-bioc\meat\arrayQualityMetrics.Rcheck\00_pkg_src\arrayQualityMetrics\chm\arrayQualityMetrics.chm

Compile time: 0 minutes, 0 seconds
3	Topics
9	Local links
0	Internet links
1	Graphic

Created e:\biocbld\bbs-2.1-bioc\meat\arrayQualityMetrics.Rcheck\00_pkg_src\arrayQualityMetrics\chm\arrayQualityMetrics.chm, 18,706 bytes
Compression increased file by 4,452 bytes.
  preparing package arrayQualityMetrics for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: geneplotter
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: xtable
Loading required package: lattice
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: vsn
Loading required package: affy
Loading required package: affyio
Loading required package: preprocessCore
Loading required package: limma
Loading required package: RColorBrewer
Loading required package: affyPLM
Loading required package: gcrma
Loading required package: matchprobes
Loading required package: simpleaffy
Loading required package: CCl4
Loading required package: latticeExtra
Loading required package: grid
  adding MD5 sums

* DONE (arrayQualityMetrics)