Back to the "Multiple platform build/check report"[A] B  C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

Package 20/233HostnameOS / ArchBUILDCHECKBUILD BIN
annotationTools 1.8.0
Alexandre Kuhn
Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/annotationTools
Last Changed Rev: 27709 / Revision: 30966
Last Changed Date: 2007-10-02 17:41:09 -0700 (Tue, 02 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: annotationTools
Version: 1.8.0
Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check annotationTools_1.8.0.tar.gz
StartedAt: 2008-04-09 18:18:36 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 18:20:22 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 105.9 seconds
RetCode: 0
Status: OK
CheckDir: annotationTools.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.1-bioc/meat/annotationTools.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'annotationTools/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'annotationTools' version '1.8.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'annotationTools' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating annotationTools-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating annotationTools-manual.tex ... OK
* checking annotationTools-manual.tex ... OK

annotationTools.Rcheck/00install.out:

installing R.css in D:/biocbld/bbs-2.1-bioc/meat/annotationTools.Rcheck


---------- Making package annotationTools ------------
  adding build stamp to DESCRIPTION
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'annotationTools'
     Formats: text html latex example chm 
  HG-U133_Plus_2_annot_part         text    html    latex           chm
  HG-U133_Plus_2_ortholog_part      text    html    latex           chm
  Mouse430_2_annot_part             text    html    latex           chm
  annot_HGU133A                     text    html    latex           chm
  compactList                       text    html    latex   example chm
  getANNOTATION                     text    html    latex   example chm
  getGENEID                         text    html    latex   example chm
  getGENEONTOLOGY                   text    html    latex   example chm
  getGENESYMBOL                     text    html    latex   example chm
  getGENETITLE                      text    html    latex   example chm
  getHOMOLOG                        text    html    latex   example chm
  getMULTIANNOTATION                text    html    latex   example chm
  getOrthologousProbesets           text    html    latex   example chm
  getPROBESET                       text    html    latex   example chm
  homologene_part                   text    html    latex           chm
  listToCharacterVector             text    html    latex   example chm
  ortho                             text    html    latex           chm
  ps2ps                             text    html    latex   example chm
  table_human                       text    html    latex           chm
  table_mouse                       text    html    latex           chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.
HHC4016: Warning: Cannot open "am Files\Intel\DMIX;c:\Program Files\Windows Resource Kits\Tools\;c:\Program Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program File".
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\bbs-2.1-bioc\meat\annotationTools.Rcheck\00_pkg_src\annotationTools\chm\annotationTools.chm

HHC4016: Warning: Cannot open "am Files\Intel\DMIX;c:\Program Files\Windows Resource Kits\Tools\;c:\Program Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program File".


The following files were not compiled:
  adding MD5 sums

* DONE (annotationTools)