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Package 16/233HostnameOS / ArchBUILDCHECKBUILD BIN
annaffy 1.10.1
Colin A. Smith
Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008)
Last Changed Rev: 28550 / Revision: 30966
Last Changed Date: 2007-11-07 13:51:28 -0800 (Wed, 07 Nov 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK [ OK ] OK 
Package: annaffy
Version: 1.10.1
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check annaffy_1.10.1.tar.gz
StartedAt: 2008-04-09 14:58:34 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 15:02:48 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 254.2 seconds
RetCode: 0
Status: OK
CheckDir: annaffy.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory '/Users/biocbuild/bbs-2.1-bioc/meat/annaffy.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'annaffy/DESCRIPTION' ... OK
* this is package 'annaffy' version '1.10.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'annaffy' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating annaffy-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating annaffy-manual.tex ... OK
* checking annaffy-manual.tex ... OK


* Installing *source* package 'annaffy' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: GO
Loading required package: KEGG
** help
 >>> Building/Updating help pages for package 'annaffy'
     Formats: text html latex example 
  aaf.character                     text    html    latex
  aaf.goterm                        text    html    latex
  aaf.handler                       text    html    latex
  aaf.integer                       text    html    latex
  aaf.raw                           text    html    latex
  aafChromLoc-class                 text    html    latex
  aafChromLoc                       text    html    latex   example
  aafChromosome-class               text    html    latex
  aafChromosome                     text    html    latex   example
  aafCytoband-class                 text    html    latex
  aafCytoband                       text    html    latex   example
  aafDescription-class              text    html    latex
  aafDescription                    text    html    latex   example
  aafExpr                           text    html    latex
  aafGO-class                       text    html    latex
  aafGO                             text    html    latex   example
  aafGOItem-class                   text    html    latex
  aafGenBank-class                  text    html    latex
  aafGenBank                        text    html    latex   example
  aafIntensity-class                text    html    latex
  aafList-class                     text    html    latex
  aafLocusLink-class                text    html    latex
  aafLocusLink                      text    html    latex   example
  aafPathway-class                  text    html    latex
  aafPathway                        text    html    latex   example
  aafPathwayItem-class              text    html    latex
  aafProbe-class                    text    html    latex
  aafProbe                          text    html    latex   example
  aafPubMed-class                   text    html    latex
  aafPubMed                         text    html    latex   example
  aafSearchGO                       text    html    latex
  aafSearchText                     text    html    latex   example
  aafSigned-class                   text    html    latex
  aafSymbol-class                   text    html    latex
  aafSymbol                         text    html    latex   example
  aafTable-class                    text    html    latex
  aafTable                          text    html    latex
  aafTableAnn                       text    html    latex
  aafTableFrame                     text    html    latex
  aafTableInt                       text    html    latex
  aafUniGene-class                  text    html    latex
  aafUniGene                        text    html    latex   example
  chkPkgs                           text    html    latex
  getCSS-methods                    text    html    latex
  getHTML-methods                   text    html    latex
  getTD-methods                     text    html    latex
  getText-methods                   text    html    latex
  getURL-methods                    text    html    latex
  is.annpkg                         text    html    latex   example
  selectorWidget                    text    html    latex
** building package indices ...
* DONE (annaffy)