Back to the "Multiple platform build/check report"[A] B  C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

Package 16/233HostnameOS / ArchBUILDCHECKBUILD BIN
annaffy 1.10.1
Colin A. Smith
Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008)
Last Changed Rev: 28550 / Revision: 30966
Last Changed Date: 2007-11-07 13:51:28 -0800 (Wed, 07 Nov 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
lemming Windows Server 2003 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: annaffy
Version: 1.10.1
Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check annaffy_1.10.1.tar.gz
StartedAt: 2008-04-09 16:45:11 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 16:48:27 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 196.2 seconds
RetCode: 0
Status: OK
CheckDir: annaffy.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory 'E:/biocbld/bbs-2.1-bioc/meat/annaffy.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'annaffy/DESCRIPTION' ... OK
* this is package 'annaffy' version '1.10.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'annaffy' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating annaffy-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating annaffy-manual.tex ... OK
* checking annaffy-manual.tex ... OK


installing R.css in E:/biocbld/bbs-2.1-bioc/meat/annaffy.Rcheck

---------- Making package annaffy ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  installing data files
  preparing package annaffy for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: GO
Loading required package: KEGG
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'annaffy'
     Formats: text html latex example chm 
  aaf.character                     text    html    latex           chm
  aaf.goterm                        text    html    latex           chm
  aaf.handler                       text    html    latex           chm
  aaf.integer                       text    html    latex           chm
  aaf.raw                           text    html    latex           chm
  aafChromLoc-class                 text    html    latex           chm
  aafChromLoc                       text    html    latex   example chm
  aafChromosome-class               text    html    latex           chm
  aafChromosome                     text    html    latex   example chm
  aafCytoband-class                 text    html    latex           chm
  aafCytoband                       text    html    latex   example chm
  aafDescription-class              text    html    latex           chm
  aafDescription                    text    html    latex   example chm
  aafExpr                           text    html    latex           chm
  aafGO-class                       text    html    latex           chm
  aafGO                             text    html    latex   example chm
  aafGOItem-class                   text    html    latex           chm
  aafGenBank-class                  text    html    latex           chm
  aafGenBank                        text    html    latex   example chm
  aafIntensity-class                text    html    latex           chm
  aafList-class                     text    html    latex           chm
  aafLocusLink-class                text    html    latex           chm
  aafLocusLink                      text    html    latex   example chm
  aafPathway-class                  text    html    latex           chm
  aafPathway                        text    html    latex   example chm
  aafPathwayItem-class              text    html    latex           chm
  aafProbe-class                    text    html    latex           chm
  aafProbe                          text    html    latex   example chm
  aafPubMed-class                   text    html    latex           chm
  aafPubMed                         text    html    latex   example chm
  aafSearchGO                       text    html    latex           chm
  aafSearchText                     text    html    latex   example chm
  aafSigned-class                   text    html    latex           chm
  aafSymbol-class                   text    html    latex           chm
  aafSymbol                         text    html    latex   example chm
  aafTable-class                    text    html    latex           chm
  aafTable                          text    html    latex           chm
  aafTableAnn                       text    html    latex           chm
  aafTableFrame                     text    html    latex           chm
  aafTableInt                       text    html    latex           chm
  aafUniGene-class                  text    html    latex           chm
  aafUniGene                        text    html    latex   example chm
  chkPkgs                           text    html    latex           chm
  getCSS-methods                    text    html    latex           chm
  getHTML-methods                   text    html    latex           chm
  getTD-methods                     text    html    latex           chm
  getText-methods                   text    html    latex           chm
  getURL-methods                    text    html    latex           chm
  is.annpkg                         text    html    latex   example chm
  selectorWidget                    text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.1-bioc\meat\annaffy.Rcheck\00_pkg_src\annaffy\chm\annaffy.chm

Compile time: 0 minutes, 0 seconds
51	Topics
294	Local links
5	Internet links
1	Graphic

Created e:\biocbld\bbs-2.1-bioc\meat\annaffy.Rcheck\00_pkg_src\annaffy\chm\annaffy.chm, 47,162 bytes
Compression decreased file by 101,091 bytes.
  adding MD5 sums

* DONE (annaffy)