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Package 226/233HostnameOS / ArchBUILDCHECKBUILD BIN
VanillaICE 1.0.2
Robert Scharpf
Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/VanillaICE
Last Changed Rev: 27988 / Revision: 30966
Last Changed Date: 2007-10-14 10:06:21 -0700 (Sun, 14 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64 [ OK ] OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: VanillaICE
Version: 1.0.2
Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD build VanillaICE
StartedAt: 2008-04-09 17:42:21 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 17:44:32 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 131.5 seconds
RetCode: 0
Status: OK
PackageFile: VanillaICE_1.0.2.tar.gz
PackageFileSize: 963.3 KiB

Command output

* checking for file 'VanillaICE/DESCRIPTION' ... OK
* preparing 'VanillaICE':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
installing R.css in D:/biocbld/bbs-2.1-bioc/tmpdir/Rinst358465109


---------- Making package VanillaICE ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  installing data files
  preparing package VanillaICE for lazy loading
Loading required package: SNPchip
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: oligoClasses
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'VanillaICE'
     Formats: text html latex example chm 
  HmmSnpCallSet-class               text    html    latex   example chm
  HmmSnpCopyNumberSet-class         text    html    latex   example chm
  HmmSnpSet-class                   text    html    latex   example chm
  ParHSet-class                     text    html    latex   example chm
  ParHmmSnpCallSet-class            text    html    latex   example chm
  ParHmmSnpCopyNumberSet-class      text    html    latex   example chm
  ParHmmSnpSet-class                text    html    latex   example chm
  bind                              text    html    latex   example chm
  breakpoints                       text    html    latex   example chm
  byArm                             text    html    latex   example chm
  calculateEmissionProbability      text    html    latex   example chm
  callEmission                      text    html    latex   example chm
  callsIce                          text    html    latex   example chm
  chromosome1                       text    html    latex   example chm
  chromosomeArm                     text    html    latex   example chm
  copyNumberIce                     text    html    latex   example chm
  distance                          text    html    latex   example chm
  emissionProbability               text    html    latex   example chm
  getCallEmission                   text    html    latex   example chm
  getCopyNumberLocation             text    html    latex   example chm
  getCopyNumberScale                text    html    latex   example chm
  getHapmapProbabilities            text    html    latex   example chm
  getInitialStateProbability        text    html    latex   example chm
  getLohProbability                 text    html    latex   example chm
  getTransitionProbability          text    html    latex   example chm
  hSet-class                        text    html    latex   example chm
  hapmapProbabilities               text    html    latex   example chm
  hmm                               text    html    latex   example chm
  hmmBySample                       text    html    latex   example chm
  initialStateProbability           text    html    latex   example chm
  isMissing                         text    html    latex   example chm
  likelihood                        text    html    latex   example chm
  locationCopyNumber                text    html    latex   example chm
  numberStates                      text    html    latex   example chm
  pCHOM                             text    html    latex   example chm
  plotPredictions                   text    html    latex   example chm
  predictions                       text    html    latex   example chm
  scaleCopyNumber                   text    html    latex   example chm
  stateNames                        text    html    latex   example chm
  transitionProbability             text    html    latex   example chm
  viterbi                           text    html    latex   example chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.

HHC4016: Warning: Cannot open "ymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".

Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\bbs-2.1-bioc\meat\VanillaICE\chm\VanillaICE.chm



HHC4016: Warning: Cannot open "ymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".





The following files were not compiled:

  adding MD5 sums

* DONE (VanillaICE)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'VanillaICE_1.0.2.tar.gz'