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Package 212/233HostnameOS / ArchBUILDCHECKBUILD BIN
SNPchip 1.2.1
Robert Scharpf
Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008)
Last Changed Rev: 27724 / Revision: 30966
Last Changed Date: 2007-10-03 06:02:47 -0700 (Wed, 03 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: SNPchip
Version: 1.2.1
Command: /home/biocbuild/bbs-2.1-bioc/R/bin/R CMD check SNPchip_1.2.1.tar.gz
StartedAt: 2008-04-09 20:36:04 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 20:39:08 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 184.5 seconds
RetCode: 0
Status: OK
CheckDir: SNPchip.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.1-bioc/meat/SNPchip.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'SNPchip/DESCRIPTION' ... OK
* this is package 'SNPchip' version '1.2.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'SNPchip' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
centromere: no visible binding for global variable
chromosomeSize: no visible binding for global variable
.drawCentromere: no visible binding for global variable
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating SNPchip-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating SNPchip-manual.tex ... OK
* checking SNPchip-manual.tex ... OK


* Installing *source* package 'SNPchip' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: oligoClasses
Creating a new generic function for "summary" in "SNPchip"
** help
 >>> Building/Updating help pages for package 'SNPchip'
     Formats: text html latex example 
  DEPRECATED-classes                text    html    latex
  ParESet-class                     text    html    latex   example
  ParSnpCallSet-class               text    html    latex   example
  ParSnpCopyNumberSet-class         text    html    latex   example
  ParSnpSet-class                   text    html    latex   example
  addFeatureData-method             text    html    latex
  allPlots-methods                  text    html    latex
  alleleA                           text    html    latex   example
  alleleB                           text    html    latex   example
  calculateCopyNumber               text    html    latex
  centromere                        text    html    latex   example
  chromosome                        text    html    latex
  chromosomeAnnotation              text    html    latex   example
  chromosomeSize                    text    html    latex   example
  coerce-methods                    text    html    latex
  cytoband                          text    html    latex   example
  dbSnpId                           text    html    latex   example
  enzyme                            text    html    latex   example
  fragmentLength                    text    html    latex   example
  getPar-methods                    text    html    latex
  getSnpAnnotation                  text    html    latex   example
  hapmap                            text    html    latex   example
  initialize-methods                text    html    latex
  plotCytoband                      text    html    latex   example
  plotSnp                           text    html    latex   example
  position                          text    html    latex
  sample.snpset                     text    html    latex   example
  selectSomeIndex                   text    html    latex   example
  show-methods                      text    html    latex
  showSummary                       text    html    latex   example
  smoothSnp                         text    html    latex   example
  snpPar                            text    html    latex   example
  summary-methods                   text    html    latex
  unsplitSnpSet                     text    html    latex   example
  updateObject-methods              text    html    latex
** building package indices ...
* DONE (SNPchip)