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Package 138/233HostnameOS / ArchBUILDCHECKBUILD BIN
MiPP 1.10.0
Sukwoo Kim
Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/MiPP
Last Changed Rev: 27709 / Revision: 30966
Last Changed Date: 2007-10-02 17:41:09 -0700 (Tue, 02 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: MiPP
Version: 1.10.0
Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check MiPP_1.10.0.tar.gz
StartedAt: 2008-04-09 20:31:08 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 20:39:17 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 489.2 seconds
RetCode: 0
Status: OK
CheckDir: MiPP.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.1-bioc/meat/MiPP.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'MiPP/DESCRIPTION' ... OK
* this is package 'MiPP' version '1.10.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'MiPP' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating MiPP-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating MiPP-manual.tex ... OK
* checking MiPP-manual.tex ... OK

MiPP.Rcheck/00install.out:

installing R.css in D:/biocbld/bbs-2.1-bioc/meat/MiPP.Rcheck


---------- Making package MiPP ------------
  adding build stamp to DESCRIPTION
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'MiPP'
     Formats: text html latex example chm 
  colon                             text    html    latex           chm
  cv.mipp.rule                      text    html    latex           chm
  get.mipp                          text    html    latex           chm
  get.mipp.lda                      text    html    latex           chm
  get.mipp.logistic                 text    html    latex           chm
  get.mipp.qda                      text    html    latex           chm
  get.mipp.svm.linear               text    html    latex           chm
  get.mipp.svm.rbf                  text    html    latex           chm
  leuk1                             text    html    latex           chm
  leuk2                             text    html    latex           chm
  leukemia                          text    html    latex           chm
  linearkernel.decision.function    text    html    latex           chm
  mipp                              text    html    latex   example chm
  mipp.preproc                      text    html    latex   example chm
  mipp.rule                         text    html    latex           chm
  mipp.seq                          text    html    latex   example chm
  pre.select                        text    html    latex           chm
  quant.normal                      text    html    latex           chm
  quant.normal2                     text    html    latex           chm
  rbfkernel.decision.function       text    html    latex           chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.
HHC4016: Warning: Cannot open "x;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\bbs-2.1-bioc\meat\MiPP.Rcheck\00_pkg_src\MiPP\chm\MiPP.chm

HHC4016: Warning: Cannot open "x;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".


The following files were not compiled:
  preparing package MiPP for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: e1071
Loading required package: class
Loading required package: MASS
  adding MD5 sums

* DONE (MiPP)