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Package 112/233HostnameOS / ArchBUILDCHECKBUILD BIN
LBE 1.6.0
Cyril Dalmasso
Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/LBE
Last Changed Rev: 27709 / Revision: 30966
Last Changed Date: 2007-10-02 17:41:09 -0700 (Tue, 02 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: LBE
Version: 1.6.0
Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check LBE_1.6.0.tar.gz
StartedAt: 2008-04-09 19:58:39 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 19:59:52 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 73.1 seconds
RetCode: 0
Status: OK
CheckDir: LBE.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.1-bioc/meat/LBE.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'LBE/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'LBE' version '1.6.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'LBE' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
LBE: no visible binding for global variable 'pvalues'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating LBE-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating LBE-manual.tex ... OK
* checking LBE-manual.tex ... OK

LBE.Rcheck/00install.out:

installing R.css in D:/biocbld/bbs-2.1-bioc/meat/LBE.Rcheck


---------- Making package LBE ------------
  adding build stamp to DESCRIPTION
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
Note: unmatched right brace in 'LBE-package' on or after line 10
Note: unmatched right brace in 'LBE-package' on or after line 11
Note: unmatched right brace in 'LBE-package.Rd' on or after line 10
Note: unmatched right brace in 'LBE-package.Rd' on or after line 11
 >>> Building/Updating help pages for package 'LBE'
     Formats: text html latex example chm 
  LBE-package                       text    html    latex           chm
  LBE                               text    html    latex   example chm
  LBEa                              text    html    latex   example chm
  LBEplot                           text    html    latex   example chm
  LBEsummary                        text    html    latex   example chm
  LBEwrite                          text    html    latex   example chm
  golub.pval                        text    html    latex           chm
  hedenfalk.pval                    text    html    latex           chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.
HHC4016: Warning: Cannot open "51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\bbs-2.1-bioc\meat\LBE.Rcheck\00_pkg_src\LBE\chm\LBE.chm

HHC4016: Warning: Cannot open "51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".


The following files were not compiled:
  adding MD5 sums

* DONE (LBE)