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Package 100/233HostnameOS / ArchBUILDCHECKBUILD BIN
HEM 1.10.0
HyungJun Cho
Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008)
Last Changed Rev: 27709 / Revision: 30966
Last Changed Date: 2007-10-02 17:41:09 -0700 (Tue, 02 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK [ OK ] OK 
Package: HEM
Version: 1.10.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check HEM_1.10.0.tar.gz
StartedAt: 2008-04-09 15:53:06 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 15:53:50 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 44.2 seconds
RetCode: 0
Status: OK
CheckDir: HEM.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory '/Users/biocbuild/bbs-2.1-bioc/meat/HEM.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'HEM/DESCRIPTION' ... OK
* this is package 'HEM' version '1.10.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'HEM' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating HEM-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating HEM-manual.tex ... OK
* checking HEM-manual.tex ... OK


* Installing *source* package 'HEM' ...
** libs
** arch - i386
gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3    -fPIC  -g -O2 -march=nocona -c hem.c -o hem.o
gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -Wl,-macosx_version_min -Wl,10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o hem.o   -F/Library/Frameworks/R.framework/.. -framework R 
** arch - ppc
gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c hem.c -o hem.o
gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -Wl,-macosx_version_min -Wl,10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o hem.o   -F/Library/Frameworks/R.framework/.. -framework R 
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
 >>> Building/Updating help pages for package 'HEM'
     Formats: text html latex example 
  am.tran                           text    html    latex
  am.tran.half                      text    html    latex
  base.ASE.Olig                     text    html    latex
  base.PSE.Olig                     text    html    latex
  base.error.Olig                   text    html    latex
  base.error.Olig.quanOnly          text    html    latex
  boot.base.ASE.Olig                text    html    latex
  boot.base.PSE.Olig                text    html    latex
  boot.base.error.Olig              text    html    latex
  fixbound.predict.smooth.spline    text    html    latex
  hem                               text    html    latex   example
  hem.eb.prior                      text    html    latex   example
  hem.fdr                           text    html    latex   example                       text    html    latex                      text    html    latex
  hem.null.two                      text    html    latex
  hem.preproc                       text    html    latex   example
  mubcp                             text    html    latex
  nonpar.error.Olig                 text    html    latex              text    html    latex
  nonpar.rep.error.Olig             text    html    latex
  par.error.Olig                    text    html    latex                 text    html    latex
  par.rep.error.Olig                text    html    latex
  pbrain                            text    html    latex
  permut                            text    html    latex
  quant.norm                        text    html    latex
  quant.normal                      text    html    latex
  quant.normal2                     text    html    latex
  quant.normalize                   text    html    latex
  remove.sig.genes                  text    html    latex
** building package indices ...