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Package 97/233HostnameOS / ArchBUILDCHECKBUILD BIN
GSEABase 1.0.3
Biocore Team c/o BioC user list
Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008)
Last Changed Rev: 29275 / Revision: 30966
Last Changed Date: 2007-12-19 23:28:59 -0800 (Wed, 19 Dec 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
lemming Windows Server 2003 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: GSEABase
Version: 1.0.3
Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check GSEABase_1.0.3.tar.gz
StartedAt: 2008-04-09 17:39:36 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 17:41:27 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 111.4 seconds
RetCode: 0
Status: OK
CheckDir: GSEABase.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory 'E:/biocbld/bbs-2.1-bioc/meat/GSEABase.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'GSEABase/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'GSEABase' version '1.0.3'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GSEABase' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating GSEABase-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating GSEABase-manual.tex ... OK
* checking GSEABase-manual.tex ... OK


installing R.css in E:/biocbld/bbs-2.1-bioc/meat/GSEABase.Rcheck

---------- Making package GSEABase ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  preparing package GSEABase for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'GSEABase'
     Formats: text html latex example chm 
  CollectionType-class              text    html    latex   example chm
  CollectionType-constructors       text    html    latex   example chm
  GSEABase-package                  text    html    latex   example chm
  GeneColorSet-class                text    html    latex   example chm
  GeneColorSet-methods              text    html    latex           chm
  GeneIdentifierType-class          text    html    latex   example chm
  GeneIdentifierType-constructors   text    html    latex   example chm
  GeneSet-class                     text    html    latex   example chm
  GeneSet-methods                   text    html    latex   example chm
  GeneSetCollection-class           text    html    latex   example chm
  GeneSetCollection-methods         text    html    latex   example chm
  details-methods                   text    html    latex           chm
  getBroadSets                      text    html    latex   example chm
  incidence-methods                 text    html    latex   example chm
  mapIdentifiers-methods            text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.1-bioc\meat\GSEABase.Rcheck\00_pkg_src\GSEABase\chm\GSEABase.chm

Compile time: 0 minutes, 0 seconds
16	Topics
300	Local links
1	Internet link
1	Graphic

Created e:\biocbld\bbs-2.1-bioc\meat\GSEABase.Rcheck\00_pkg_src\GSEABase\chm\GSEABase.chm, 54,133 bytes
Compression decreased file by 113,377 bytes.
  adding MD5 sums