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Package 92/233HostnameOS / ArchBUILDCHECKBUILD BIN
GOstats 2.4.0
Robert Gentleman
Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008)
Last Changed Rev: 27709 / Revision: 30966
Last Changed Date: 2007-10-02 17:41:09 -0700 (Tue, 02 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
lemming Windows Server 2003 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: GOstats
Version: 2.4.0
Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check GOstats_2.4.0.tar.gz
StartedAt: 2008-04-09 17:35:05 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 17:39:26 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 261.5 seconds
RetCode: 0
Status: OK
CheckDir: GOstats.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory 'E:/biocbld/bbs-2.1-bioc/meat/GOstats.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'GOstats/DESCRIPTION' ... OK
* this is package 'GOstats' version '2.4.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GOstats' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating GOstats-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating GOstats-manual.tex ... OK
* checking GOstats-manual.tex ... OK


installing R.css in E:/biocbld/bbs-2.1-bioc/meat/GOstats.Rcheck

---------- Making package GOstats ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'GOstats'
     Formats: text html latex example chm 
  GOHyperG                          text    html    latex   example chm
  GOHyperGResult-class              text    html    latex           chm
  GOLeaves                          text    html    latex   example chm
  GOstats-defunct                   text    html    latex           chm
  GOstats-package                   text    html    latex           chm
  Ndists                            text    html    latex   example chm
  compCorrGraph                     text    html    latex   example chm
  compGdist                         text    html    latex   example chm
  hyperGTest                        text    html    latex           chm
  idx2dimnames                      text    html    latex   example chm
  makeGOGraph                       text    html    latex   example chm
  notConn                           text    html    latex   example chm
  oneGOGraph                        text    html    latex   example chm
  probeSetSummary                   text    html    latex   example chm
  shortestPath                      text    html    latex   example chm
  simLL                             text    html    latex   example chm
  termGraphs                        text    html    latex           chm
  triadCensus                       text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.1-bioc\meat\GOstats.Rcheck\00_pkg_src\GOstats\chm\GOstats.chm

Compile time: 0 minutes, 0 seconds
19	Topics
74	Local links
0	Internet links
1	Graphic

Created e:\biocbld\bbs-2.1-bioc\meat\GOstats.Rcheck\00_pkg_src\GOstats\chm\GOstats.chm, 52,418 bytes
Compression decreased file by 37,884 bytes.
  preparing package GOstats for lazy loading
Loading required package: graph
Loading required package: GO.db
Loading required package: AnnotationDbi
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: DBI
Loading required package: RSQLite
Loading required package: annotate
Loading required package: xtable
Loading required package: RBGL
Loading required package: Category
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
  adding MD5 sums

* DONE (GOstats)