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Package 41/233HostnameOS / ArchBUILDCHECKBUILD BIN
BufferedMatrixMethods 1.2.0
B. M. Bolstad
Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/BufferedMatrixMethods
Last Changed Rev: 27709 / Revision: 30966
Last Changed Date: 2007-10-02 17:41:09 -0700 (Tue, 02 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: BufferedMatrixMethods
Version: 1.2.0
Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check BufferedMatrixMethods_1.2.0.tar.gz
StartedAt: 2008-04-09 18:47:32 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 18:48:59 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 87.0 seconds
RetCode: 0
Status: OK
CheckDir: BufferedMatrixMethods.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.1-bioc/meat/BufferedMatrixMethods.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'BufferedMatrixMethods/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'BufferedMatrixMethods' version '1.2.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'BufferedMatrixMethods' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating BufferedMatrixMethods-Ex.R ... OK
* checking examples ... OK
* creating BufferedMatrixMethods-manual.tex ... OK
* checking BufferedMatrixMethods-manual.tex ... OK

BufferedMatrixMethods.Rcheck/00install.out:

installing R.css in D:/biocbld/bbs-2.1-bioc/meat/BufferedMatrixMethods.Rcheck


---------- Making package BufferedMatrixMethods ------------
  adding build stamp to DESCRIPTION
  making DLL ...
making init_package.d from init_package.c
making preprocess_bm.d from preprocess_bm.c
gcc-sjlj  -std=gnu99  -Id:/biocbld/bbs-2.1-bioc/R/include -I"d:/biocbld/bbs-2.1-bioc/R/library/BufferedMatrix/include"    -O3 -Wall  -c init_package.c -o init_package.o
gcc-sjlj  -std=gnu99  -Id:/biocbld/bbs-2.1-bioc/R/include -I"d:/biocbld/bbs-2.1-bioc/R/library/BufferedMatrix/include"    -O3 -Wall  -c preprocess_bm.c -o preprocess_bm.o
preprocess_bm.c: In function 'bm_rma_bg_correct':
preprocess_bm.c:342: warning: unused variable 'i'
preprocess_bm.c: In function 'R_bm_rma_bg_correct':
preprocess_bm.c:376: warning: unused variable 'current_mode'
preprocess_bm.c: In function 'R_bm_quantile_normalize':
preprocess_bm.c:591: warning: unused variable 'current_mode'
preprocess_bm.c: At top level:
preprocess_bm.c:451: warning: 'min' defined but not used
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I d:/biocbld/bbs-2.1-bioc/R/include  -i BufferedMatrixMethods_res.rc -o BufferedMatrixMethods_res.o
gcc-sjlj  -std=gnu99  -shared -s  -o BufferedMatrixMethods.dll BufferedMatrixMethods.def init_package.o preprocess_bm.o BufferedMatrixMethods_res.o  -Ld:/biocbld/bbs-2.1-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'BufferedMatrixMethods'
     Formats: text html latex example chm 
  rmapreprocess.bufferedmatrix      text    html    latex           chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.
HHC4016: Warning: Cannot open "Array Manager;C:\usr\cygwin\bin;c:\Program Files\Subversion\bin;c:\Program Files\UltraEdit;c:\Program Files\Intel\DMIX;c:\Program Files\Windows Resource Kits\Tools\;c:\Program Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin".
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\bbs-2.1-bioc\meat\BufferedMatrixMethods.Rcheck\00_pkg_src\BufferedMatrixMethods\chm\BufferedMatrixMethods.chm

HHC4016: Warning: Cannot open "Array Manager;C:\usr\cygwin\bin;c:\Program Files\Subversion\bin;c:\Program Files\UltraEdit;c:\Program Files\Intel\DMIX;c:\Program Files\Windows Resource Kits\Tools\;c:\Program Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin".


The following files were not compiled:
  adding MD5 sums

* DONE (BufferedMatrixMethods)