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Package 19/233HostnameOS / ArchBUILDCHECKBUILD BIN
AnnotationDbi 1.0.6
Biocore Team c/o BioC user list
Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/AnnotationDbi
Last Changed Rev: 29154 / Revision: 30966
Last Changed Date: 2007-12-11 12:11:10 -0800 (Tue, 11 Dec 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64 [ OK ] OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: AnnotationDbi
Version: 1.0.6
Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD build AnnotationDbi
StartedAt: 2008-04-09 17:19:34 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 17:21:12 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 98.0 seconds
RetCode: 0
Status: OK
PackageFile: AnnotationDbi_1.0.6.tar.gz
PackageFileSize: 221 KiB

Command output

* checking for file 'AnnotationDbi/DESCRIPTION' ... OK
* preparing 'AnnotationDbi':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
installing R.css in D:/biocbld/bbs-2.1-bioc/tmpdir/Rinst388039447


---------- Making package AnnotationDbi ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'AnnotationDbi'
     Formats: text html latex example chm 
  AnnDbBimap-envirAPI               text    html    latex   example chm
  AnnDbObj-class                    text    html    latex   example chm
  AnnDbPkg-checker                  text    html    latex   example chm
  AnnDbPkg-maker                    text    html    latex   example chm
  AnnotationDbi-internals           text    html    latex           chm
  Bimap-colmethods                  text    html    latex   example chm
  Bimap-direction                   text    html    latex   example chm
  Bimap-keymethods                  text    html    latex   example chm
  Bimap-toTable                     text    html    latex   example chm
  Bimap                             text    html    latex   example chm
  BimapFormatting                   text    html    latex   example chm
  GOTerms-class                     text    html    latex   example chm
  make_eg_to_go_map                 text    html    latex   example chm
  toSQLStringSet                    text    html    latex   example chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.

HHC4016: Warning: Cannot open ":\Program Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".

Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\bbs-2.1-bioc\meat\AnnotationDbi\chm\AnnotationDbi.chm



HHC4016: Warning: Cannot open ":\Program Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".





The following files were not compiled:

  preparing package AnnotationDbi for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: DBI
Loading required package: RSQLite
Creating a new generic function for "toString" in "AnnotationDbi"
Creating a new generic function for "rev" in "AnnotationDbi"
Creating a new generic function for "colnames" in "AnnotationDbi"
Creating a new generic function for "subset" in "AnnotationDbi"
Creating a new generic function for "head" in "AnnotationDbi"
Creating a new generic function for "tail" in "AnnotationDbi"
Creating a new generic function for "nrow" in "AnnotationDbi"
Creating a new generic function for "ncol" in "AnnotationDbi"
Creating a new generic function for "as.list" in "AnnotationDbi"
Creating a new generic function for "ls" in "AnnotationDbi"
Creating a new generic function for "mget" in "AnnotationDbi"
Creating a new generic function for "eapply" in "AnnotationDbi"
Creating a new generic function for "get" in "AnnotationDbi"
Creating a new generic function for "exists" in "AnnotationDbi"
Creating a new generic function for "sample" in "AnnotationDbi"
  adding MD5 sums

* DONE (AnnotationDbi)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/AFFYHUEX.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/FLY.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/FLYCHIP.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/GO.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/HUMAN.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/HUMANCHIP.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/KEGG.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/RODENT.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/RODENTCHIP.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/YEAST.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/YEASTCHIP.DB/inst/extdata' is empty
* building 'AnnotationDbi_1.0.6.tar.gz'