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Package 142/233HostnameOS / ArchBUILDCHECKBUILD BIN
nem 2.2.1
Florian Markowetz
Snapshot Date: 2008-04-02 12:12:36 -0700 (Wed, 02 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/nem
Last Changed Rev: 27801 / Revision: 30807
Last Changed Date: 2007-10-05 17:10:29 -0700 (Fri, 05 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64  OK  OK [ OK ]
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: nem
Version: 2.2.1
Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD INSTALL --build --library=nem.buildbin-libdir nem_2.2.1.tar.gz
StartedAt: 2008-04-02 23:24:30 -0700 (Wed, 02 Apr 2008)
EndedAt: 2008-04-02 23:25:36 -0700 (Wed, 02 Apr 2008)
EllapsedTime: 66.9 seconds
RetCode: 0
Status: OK
PackageFile: nem_2.2.1.zip
PackageFileSize: 3.931 MiB

Command output

installing R.css in D:/biocbld/bbs-2.1-bioc/meat/nem.buildbin-libdir

Using auto-selected zip options 'nem-ZIPDATA=zip nem-HELP=ziponly'

---------- Making package nem ------------
  adding build stamp to DESCRIPTION
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  zipping data
  installing help
Note: unmatched right brace in 'nem.greedy' on or after line 41
Note: unmatched right brace in 'nem.greedy.Rd' on or after line 41
 >>> Building/Updating help pages for package 'nem'
     Formats: text html latex example chm 
  BFSlevel                          text    html    latex   example chm
  BoutrosRNAi2002                   text    html    latex   example chm
  CONTmLL                           text    html    latex   example chm
  FULLmLL                           text    html    latex   example chm
  SCCgraph                          text    html    latex   example chm
  enumerate.models                  text    html    latex   example chm
  getDensityMatrix                  text    html    latex           chm
  internal                          text    html    latex           chm
  local.model.prior                 text    html    latex   example chm
  mLL                               text    html    latex   example chm
  moduleNetwork                     text    html    latex   example chm
  nem                               text    html    latex   example chm
  nem.cont.preprocess               text    html    latex   example chm
  nem.discretize                    text    html    latex   example chm
  nem.greedy                        text    html    latex   example chm
  nemModelSelection                 text    html    latex   example chm
  network.AIC                       text    html    latex   example chm
  pairwise.posterior                text    html    latex   example chm
  plot.effects                      text    html    latex   example chm
  plot.nem                          text    html    latex           chm
  prune.graph                       text    html    latex   example chm
  score                             text    html    latex   example chm
  selectEGenes                      text    html    latex   example chm
  subsets                           text    html    latex   example chm
  transitive.closure                text    html    latex   example chm
  transitive.reduction              text    html    latex   example chm
  triples.posterior                 text    html    latex   example chm
  zipping help files
HHC5012: Error: Cannot create a temporary file in your TEMP path.

HHC4016: Warning: Cannot open " NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".

Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\bbs-2.1-bioc\meat\R.INSTALL.5972\nem\chm\nem.chm



HHC4016: Warning: Cannot open " NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".





The following files were not compiled:

  preparing package nem for lazy loading
Loading required package: e1071
Loading required package: class
Loading required package: graph
Loading required package: Rgraphviz
Loading required package: RBGL

Attaching package: 'RBGL'


	The following object(s) are masked from package:e1071 :

	 extractPath 

Loading required package: time
  adding MD5 sums

packaged installation of package 'nem' as nem_2.2.1.zip
* DONE (nem)