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Package 101/233HostnameOS / ArchBUILDCHECKBUILD BIN
hexbin 1.12.0
Nicholas Lewin-Koh
Snapshot Date: 2008-04-02 12:12:36 -0700 (Wed, 02 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/hexbin
Last Changed Rev: 27709 / Revision: 30807
Last Changed Date: 2007-10-02 17:41:09 -0700 (Tue, 02 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: hexbin
Version: 1.12.0
Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check hexbin_1.12.0.tar.gz
StartedAt: 2008-04-02 19:52:28 -0700 (Wed, 02 Apr 2008)
EndedAt: 2008-04-02 19:55:53 -0700 (Wed, 02 Apr 2008)
EllapsedTime: 205.7 seconds
RetCode: 0
Status: OK
CheckDir: hexbin.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.1-bioc/meat/hexbin.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'hexbin/DESCRIPTION' ... OK
* this is package 'hexbin' version '1.12.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'hexbin' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
all.intersect: no visible binding for global variable 'binlst'
grid.hexagons: no visible binding for global variable 'bin'
hexplom.formula: no visible global function definition for 'updateList'
inout.hex: no visible global function definition for 'exit'
mixcolors: no visible global function definition for 'coords'
panel.hexpose: no visible binding for global variable 'h'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating hexbin-Ex.R ... OK
* checking examples ... OK
* checking tests ...
make[1]: Entering directory `/cygdrive/d/biocbld/bbs-2.1-bioc/meat/hexbin.Rcheck/tests'
  Running 'hdiffplot.R'
  Comparing 'hdiffplot.Rout' to 'hdiffplot.Rout.save' ...3a4,11
> 
> Attaching package: 'colorspace'
> 
> 
> 	The following object(s) are masked from package:grDevices :
> 
> 	 hcl 
> 
8,9c16
< In RNGkind("Marsaglia-Multicarry", "Buggy Kinderman-Ramage") :
<   Buggy version of Kinderman-Ramage generator used.
---
> Buggy version of Kinderman-Ramage generator used. in: RNGkind("Marsaglia-Multicarry", "Buggy Kinderman-Ramage") 
59c66
<   ..@ eroded: logi [1:535] FALSE FALSE FALSE FALSE FALSE FALSE ...
---
>   ..@ eroded: logi [1:535] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE ...
104c111
<   ..@ eroded: logi [1:906] FALSE FALSE FALSE FALSE FALSE FALSE ...
---
>   ..@ eroded: logi [1:906] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE ...
135d141
< + plot.new()
138,146d143
< [1] 0
< [1] 0.5
< [1] "1:2"
< [1] 0
< [1] 0.5
< [1] "1:2"
< [1] 0
< [1] 0.5
< [1] "1:2"
OK
  Running 'hray.R'
  Running 'large.R'
  Running 'viewp-ex.R'
make[1]: Leaving directory `/cygdrive/d/biocbld/bbs-2.1-bioc/meat/hexbin.Rcheck/tests'
 OK
* checking package vignettes in 'inst/doc' ... OK
* creating hexbin-manual.tex ... OK
* checking hexbin-manual.tex ... OK

hexbin.Rcheck/00install.out:

installing R.css in D:/biocbld/bbs-2.1-bioc/meat/hexbin.Rcheck


---------- Making package hexbin ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
gfortran-sjlj   -O3  -c hbin.f -o hbin.o
gfortran-sjlj   -O3  -c hcell.f -o hcell.o
gfortran-sjlj   -O3  -c herode.f -o herode.o
gfortran-sjlj   -O3  -c hsm.f -o hsm.o
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I d:/biocbld/bbs-2.1-bioc/R/include  -i hexbin_res.rc -o hexbin_res.o
gcc-sjlj  -std=gnu99  -shared -s  -o hexbin.dll hexbin.def hbin.o hcell.o herode.o hsm.o hexbin_res.o  -Ld:/biocbld/bbs-2.1-bioc/R/bin   -lgfortran -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'hexbin'
     Formats: text html latex example chm 
  NHANES                            text    html    latex   example chm
  colramp                           text    html    latex   example chm
  erode.hexbin                      text    html    latex   example chm
  getHMedian                        text    html    latex   example chm
  gplot.hexbin                      text    html    latex   example chm
  grid.hexagons                     text    html    latex   example chm
  grid.hexlegend                    text    html    latex   example chm
  hboxplot                          text    html    latex   example chm
  hcell2xy                          text    html    latex   example chm
  hcell2xyInt                       text    html    latex   example chm
  hdiffplot                         text    html    latex   example chm
  hexGraphPaper                     text    html    latex   example chm
  hexList                           text    html    latex   example chm
  hexMA.loess                       text    html    latex   example chm
  hexTapply                         text    html    latex   example chm
  hexVP-class                       text    html    latex   example chm
  hexVP.abline                      text    html    latex   example chm
  hexViewport                       text    html    latex   example chm
  hexbin                            text    html    latex   example chm
  hexbinplot                        text    html    latex   example chm
  hexplom                           text    html    latex   example chm
  hexpolygon                        text    html    latex   example chm
  hsmooth-methods                   text    html    latex           chm
  inout.hex                         text    html    latex           chm
  list2hexList                      text    html    latex           chm
  old-classes                       text    html    latex           chm
  optShape                          text    html    latex   example chm
  panel.hexboxplot                  text    html    latex   example chm
  panel.hexgrid                     text    html    latex   example chm
  panel.hexloess                    text    html    latex   example chm
  plotMAhex                         text    html    latex   example chm
  pushHexport                       text    html    latex           chm
  smooth.hexbin                     text    html    latex   example chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.
HHC4016: Warning: Cannot open "NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\bbs-2.1-bioc\meat\hexbin.Rcheck\00_pkg_src\hexbin\chm\hexbin.chm

HHC4016: Warning: Cannot open "NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".


The following files were not compiled:
  preparing package hexbin for lazy loading
Loading required package: grid
Loading required package: lattice
Creating a new generic function for "plot" in "hexbin"
Creating a new generic function for "summary" in "hexbin"
  adding MD5 sums

* DONE (hexbin)