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Package 212/233HostnameOS / ArchBUILDCHECKBUILD BIN
SNPchip 1.2.1
Robert Scharpf
Snapshot Date: 2008-04-02 12:12:36 -0700 (Wed, 02 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/SNPchip
Last Changed Rev: 27724 / Revision: 30807
Last Changed Date: 2007-10-03 06:02:47 -0700 (Wed, 03 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64 [ OK ] OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: SNPchip
Version: 1.2.1
Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD build SNPchip
StartedAt: 2008-04-02 17:05:23 -0700 (Wed, 02 Apr 2008)
EndedAt: 2008-04-02 17:07:24 -0700 (Wed, 02 Apr 2008)
EllapsedTime: 121.8 seconds
RetCode: 0
Status: OK
PackageFile: SNPchip_1.2.1.tar.gz
PackageFileSize: 1.743 MiB

Command output

* checking for file 'SNPchip/DESCRIPTION' ... OK
* preparing 'SNPchip':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
installing R.css in D:/biocbld/bbs-2.1-bioc/tmpdir/Rinst507615853


---------- Making package SNPchip ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  installing data files
  preparing package SNPchip for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: oligoClasses
Creating a new generic function for "summary" in "SNPchip"
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'SNPchip'
     Formats: text html latex example chm 
  DEPRECATED-classes                text    html    latex           chm
  ParESet-class                     text    html    latex   example chm
  ParSnpCallSet-class               text    html    latex   example chm
  ParSnpCopyNumberSet-class         text    html    latex   example chm
  ParSnpSet-class                   text    html    latex   example chm
  addFeatureData-method             text    html    latex           chm
  allPlots-methods                  text    html    latex           chm
  alleleA                           text    html    latex   example chm
  alleleB                           text    html    latex   example chm
  calculateCopyNumber               text    html    latex           chm
  centromere                        text    html    latex   example chm
  chromosome                        text    html    latex           chm
  chromosomeAnnotation              text    html    latex   example chm
  chromosomeSize                    text    html    latex   example chm
  coerce-methods                    text    html    latex           chm
  cytoband                          text    html    latex   example chm
  dbSnpId                           text    html    latex   example chm
  enzyme                            text    html    latex   example chm
  fragmentLength                    text    html    latex   example chm
  getPar-methods                    text    html    latex           chm
  getSnpAnnotation                  text    html    latex   example chm
  hapmap                            text    html    latex   example chm
  initialize-methods                text    html    latex           chm
  plotCytoband                      text    html    latex   example chm
  plotSnp                           text    html    latex   example chm
  position                          text    html    latex           chm
  sample.snpset                     text    html    latex   example chm
  selectSomeIndex                   text    html    latex   example chm
  show-methods                      text    html    latex           chm
  showSummary                       text    html    latex   example chm
  smoothSnp                         text    html    latex   example chm
  snpPar                            text    html    latex   example chm
  summary-methods                   text    html    latex           chm
  unsplitSnpSet                     text    html    latex   example chm
  updateObject-methods              text    html    latex           chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.

HHC4016: Warning: Cannot open "fx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".

Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\bbs-2.1-bioc\meat\SNPchip\chm\SNPchip.chm



HHC4016: Warning: Cannot open "fx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".





The following files were not compiled:

  adding MD5 sums

* DONE (SNPchip)
* creating vignettes ... OK
* removing junk files
* excluding invalid files from 'SNPchip'
Subdirectory 'man' contains invalid file names:
  .calculateYlim.Rd
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'SNPchip_1.2.1.tar.gz'