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| Package 154/234 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
| pamr 1.36.0 Rob Tibshirani Last Changed Date: 2007-10-02 17:41:09 -0700 Last Changed Rev: 27709 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | OK | |
| wellington | Linux (SUSE 9.2) | i686 | OK | OK | ||
| liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | WARNINGS | OK | |
| pitt | Mac OS X (10.4.10) | i386 | OK | WARNINGS | [ OK ] |
| Package: pamr |
| Version: 1.36.0 |
| Command: /Users/biocbuild/BBS/utils/build-universal.sh pamr_1.36.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R pamr.buildbin-libdir |
| RetCode: 0 |
| Time: 7.7 seconds |
| Status: OK |
| PackageFile: pamr_1.36.0.tgz |
INSTALLATION WITH 'R CMD INSTALL pamr_1.36.0.tar.gz'
* Installing to library 'pamr.buildbin-libdir'
* Installing *source* package 'pamr' ...
** libs
** arch - i386
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -fPIC -g -O2 -Wall -march=nocona -c cox_func.c -o cox_func.o
gfortran-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -fPIC -g -O2 -Wall -march=nocona -c knnimpute.f -o knnimpute.o
Warning: Nonconforming tab character in column 1 of line 89
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knnimpute.f:6.37:
integer iworkp(p),iworkn(n), jj
1
Warning: Unused variable jj declared at (1)
knnimpute.f: In function 'twomis':
knnimpute.f:132: warning: 'dold' may be used uninitialized in this function
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o pamr.so cox_func.o knnimpute.o -L/usr/local/lib/gcc/i686-apple-darwin8/4.2.1 -lgfortran -lgcc_s.10.4 -F/Library/Frameworks/R.framework/.. -framework R
** arch - ppc
gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -Wall -c cox_func.c -o cox_func.o
gfortran-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -fPIC -g -O2 -Wall -c knnimpute.f -o knnimpute.o
Warning: Nonconforming tab character in column 1 of line 89
Warning: Nonconforming tab character in column 1 of line 91
Warning: Nonconforming tab character in column 1 of line 92
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Warning: Nonconforming tab character in column 1 of line 122
knnimpute.f:6.37:
integer iworkp(p),iworkn(n), jj
1
Warning: Unused variable jj declared at (1)
knnimpute.f: In function 'twomis':
knnimpute.f:132: warning: 'dold' may be used uninitialized in this function
gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o pamr.so cox_func.o knnimpute.o -L/usr/local/lib/gcc/powerpc-apple-darwin8/4.2.1 -lgfortran -lgcc_s.10.4 -lSystemStubs -F/Library/Frameworks/R.framework/.. -framework R
** R
** data
** inst
** help
Note: unmatched right brace in 'pamr.confusion.survival' on or after line 24
Note: unmatched right brace in 'pamr.listgenes' on or after line 8
Note: unmatched right brace in 'pamr.plotcen' on or after line 7
Note: unmatched right brace in 'pamr.predict' on or after line 8
Note: unmatched right brace in 'pamr.predictmany' on or after line 8
>>> Building/Updating help pages for package 'pamr'
Formats: text html latex example
khan text html latex
pamr.adaptthresh text html latex example
pamr.batchadjust text html latex example
pamr.confusion text html latex example
pamr.confusion.survival text html latex example
pamr.cv text html latex example
pamr.decorrelate text html latex example
pamr.fdr text html latex example
pamr.from.excel text html latex
pamr.geneplot text html latex example
pamr.indeterminate text html latex example
pamr.internal text html latex
pamr.knnimpute text html latex
pamr.listgenes text html latex example
pamr.makeclasses text html latex example
pamr.menu text html latex example
pamr.plotcen text html latex example
pamr.plotcv text html latex example
pamr.plotcvprob text html latex example
pamr.plotfdr text html latex example
pamr.plotstrata text html latex example
pamr.plotsurvival text html latex example
pamr.predict text html latex example
pamr.predictmany text html latex example
pamr.surv.to.class2 text html latex example
pamr.test.errors.surv.compute text html latex example
pamr.to.excel text html latex
pamr.train text html latex example
** building package indices ...
* DONE (pamr)