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Package 107/234HostnameOSArchBUILDCHECKBUILD BIN
iSNetwork 1.8.0
Elizabeth Whalen
Last Changed Date: 2007-10-02 17:41:09 -0700
Last Changed Rev: 27709
lamb1 Linux (SUSE 10.1) x86_64  OK  WARNINGS 
wellington Linux (SUSE 9.2) i686 [ ERROR ]skipped
liverpool Windows Server 2003 R2 (32-bit) x64 N O T   S U P P O R T E D
pitt Mac OS X (10.4.10) i386  OK  OK  OK 
Package: iSNetwork
Version: 1.8.0
Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD build iSNetwork
RetCode: 1
Time: 6.9 seconds
Status: ERROR
PackageFile: None

Command output

* checking for file 'iSNetwork/DESCRIPTION' ... OK
* preparing 'iSNetwork':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'iSNetwork' ...
** R
** inst
** preparing package for lazy loading
Loading required package: graph
Loading required package: Rgraphviz
Loading required package: RGtk

 *** caught segfault ***
address (nil), cause 'memory not mapped'

Traceback:
 1: dyn.load(file, ...)
 2: library.dynam("RGtk", pkgname, libname)
 3: f(libname, pkgname)
 4: firstlib(which.lib.loc, package)
 5: doTryCatch(return(expr), name, parentenv, handler)
 6: tryCatchOne(expr, names, parentenv, handlers[[1]])
 7: tryCatchList(expr, classes, parentenv, handlers)
 8: tryCatch(expr, error = function(e) {    call <- conditionCall(e)    if (!is.null(call)) {        if (identical(call[[1]], quote(doTryCatch)))             call <- sys.call(-4)        dcall <- deparse(call)[1]        prefix <- paste("Error in", dcall, ": ")        LONG <- 75        msg <- conditionMessage(e)        sm <- strsplit(msg, "\n")[[1]]        if (14 + nchar(dcall, type = "w") + nchar(sm[1], type = "w") >             LONG)             prefix <- paste(prefix, "\n  ", sep = "")    }    else prefix <- "Error : "    msg <- paste(prefix, conditionMessage(e), "\n", sep = "")    .Internal(seterrmessage(msg[1]))    if (!silent && identical(getOption("show.error.messages"),         TRUE)) {        cat(msg, file = stderr())        .Internal(printDeferredWarnings())    }    invisible(structure(msg, class = "try-error"))})
 9: try(firstlib(which.lib.loc, package))
10: library(pkg, character.only = TRUE, logical.return = TRUE, lib.loc = lib.loc)
11: .getRequiredPackages2(pkgInfo, quietly, , useImports)
12: .getRequiredPackages()
aborting ...
/loc/biocbuild/bbs-2.1-bioc/R/bin/INSTALL: line 465: 14308 Done                    ( echo "options(warn=1); invisible(.libPaths(c(\"${lib}\", .libPaths()))); .getRequiredPackages(); tools:::makeLazyLoading(\"${R_PACKAGE_NAME}\", \"${lib}\")" )
     14309 Segmentation fault      | R_DEFAULT_PACKAGES= LC_ALL=C "${R_EXE}" --vanilla --slave
ERROR: lazy loading failed for package 'iSNetwork'
** Removing '/tmp/Rinst1414782867/iSNetwork'
 ERROR
Installation failed.
Removing '/tmp/Rinst1414782867'