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SMAP 1.2.0
Robin Andersson
Last Changed Date: 2007-10-02 17:41:09 -0700
Last Changed Rev: 27709
lamb1 Linux (SUSE 10.1) x86_64  OK  OK 
wellington Linux (SUSE 9.2) i686 [ OK ] OK 
liverpool Windows Server 2003 R2 (32-bit) x64  OK  OK  OK 
pitt Mac OS X (10.4.10) i386  OK  OK  OK 
Package: SMAP
Version: 1.2.0
Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD build SMAP
RetCode: 0
Time: 89.0 seconds
Status: OK
PackageFile: SMAP_1.2.0.tar.gz

Command output

* checking for file 'SMAP/DESCRIPTION' ... OK
* preparing 'SMAP':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'SMAP' ...
** libs
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c gradient.c -o gradient.o
gradient.c: In function `hmm_update':
gradient.c:247: warning: unused variable `tmp'
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c init.c -o init.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c overlap.c -o overlap.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c prob.c -o prob.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c viterbi.c -o viterbi.o
gcc -std=gnu99 -shared -L/usr/local/lib -o SMAP.so gradient.o init.o overlap.o prob.o viterbi.o   -L/loc/biocbuild/bbs-2.1-bioc/R/lib -lR
** R
** data
** inst
** preparing package for lazy loading
Creating a new generic function for "plot" in "SMAP"
** help
 >>> Building/Updating help pages for package 'SMAP'
     Formats: text html latex example 
  GBM                               text    html    latex   example
  SMAP-internal                     text    html    latex
  SMAPHMM-class                     text    html    latex
  SMAPHMM                           text    html    latex
  SMAPObservations-class            text    html    latex
  SMAPObservations                  text    html    latex   example
  SMAPProfile-class                 text    html    latex
  SMAPProfiles-class                text    html    latex
  smap                              text    html    latex   example
** building package indices ...
* DONE (SMAP)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'SMAP_1.2.0.tar.gz'