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makecdfenv

1.14.0

James W. MacDonald
Last Changed Date: 2007-04-24 11:21:48 -0700
Last Changed Rev: 24214
lamb1 Linux (SUSE 10.1) x86_64  OK  OK 
wellington Linux (SUSE 9.2) i686  OK  OK 
churchill Solaris 2.9 sparc [ OK ] OK 
lemming Windows Server 2003 (32-bit) x64  OK  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) x64  OK  OK  OK 
derby Mac OS X (10.4.9) i686  OK  OK 
Package: makecdfenv
Version: 1.14.0
Command: /loc/biocbuild/bbs-2.0-bioc/R/bin/R CMD build makecdfenv
RetCode: 0
Time: 27.8 seconds
Status: OK
PackageFile: makecdfenv_1.14.0.tar.gz

Command output

* checking for file 'makecdfenv/DESCRIPTION' ... OK
* preparing 'makecdfenv':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking whether 'INDEX' is up-to-date ... NO
* use '--force' to overwrite the existing 'INDEX'
* installing the package to re-build vignettes
* Installing *source* package 'makecdfenv' ...
creating cache ./config.cache
checking how to run the C preprocessor... cc -E
checking for main in -lz... yes
checking for zlib.h... yes
checking if zlib version >= 1.1.3... yes
updating cache ./config.cache
creating ./config.status
creating src/Makevars
** libs
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.0-bioc/R/include -I/loc/biocbuild/bbs-2.0-bioc/R/include -DHAVE_ZLIB=1  -I/usr/local/include    -fPIC  -g -O2 -Wall -c read_cdffile.c -o read_cdffile.o
read_cdffile.c: In function 'fillCharFromLine':
read_cdffile.c:396: warning: implicit declaration of function 'index'
read_cdffile.c:396: warning: incompatible implicit declaration of built-in function 'index'
read_cdffile.c: In function 'readQC':
read_cdffile.c:652: warning: incompatible implicit declaration of built-in function 'index'
read_cdffile.c:565: warning: unused variable 'param_unit'
gcc -std=gnu99 -G -L/usr/local/lib -o makecdfenv.so read_cdffile.o -lz   -L/loc/biocbuild/bbs-2.0-bioc/R/lib -lR
** R
** inst
** save image
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: affy
Loading required package: affyio
** help
 >>> Building/Updating help pages for package 'makecdfenv'
     Formats: text html latex example 
  Cdf-class                         text    html    latex
  getInfoInAffyFile                 text    html    latex
  make.cdf.env                      text    html    latex   example
  make.cdf.package                  text    html    latex   example
  pmormm                            text    html    latex
  read.cdffile                      text    html    latex   example
** building package indices ...
* DONE (makecdfenv)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'makecdfenv_1.14.0.tar.gz'