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affycoretools

1.8.0

James W. MacDonald
Last Changed Date: 2007-04-24 11:21:48 -0700
Last Changed Rev: 24214
lamb1 Linux (SUSE 10.1) x86_64  OK  OK 
wellington Linux (SUSE 9.2) i686  OK  OK 
churchill Solaris 2.9 sparc  ERROR skipped
lemming Windows Server 2003 (32-bit) x64  OK  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) x64 [ OK ] OK  OK 
derby Mac OS X (10.4.9) i686  OK  OK 
Package: affycoretools
Version: 1.8.0
Command: E:\biocbld\bbs-2.0-bioc\R\bin\R.exe CMD build affycoretools
RetCode: 0
Time: 61.5 seconds
Status: OK
PackageFile: affycoretools_1.8.0.tar.gz

Command output

* checking for file 'affycoretools/DESCRIPTION' ... OK
* preparing 'affycoretools':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
installing R.css in E:/biocbld/bbs-2.0-bioc/tmpdir/Rinst309291235


---------- Making package affycoretools ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'affycoretools'
     Formats: text html latex example chm 
  affystart                         text    html    latex           chm
  annBM                             text    html    latex   example chm
  convert.back                      text    html    latex           chm
  extractStats                      text    html    latex           chm
  foldFilt                          text    html    latex           chm
  foldFiltBM                        text    html    latex           chm
  getCols                           text    html    latex           chm
  getIndex                          text    html    latex           chm
  getOrder                          text    html    latex           chm
  getSymbol                         text    html    latex           chm
  getUniqueLL                       text    html    latex           chm
  getans                            text    html    latex           chm
  houtSig                           text    html    latex           chm
  hyperG2annaffy                    text    html    latex           chm
  hyperGoutput                      text    html    latex           chm
  intNames                          text    html    latex           chm
  limma2annaffy                     text    html    latex           chm
  limma2biomaRt                     text    html    latex           chm
  make.cl                           text    html    latex           chm
  makeFCList                        text    html    latex           chm
  makeIndices                       text    html    latex           chm
  pca.legend                        text    html    latex           chm
  plotDeg                           text    html    latex   example chm
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  probes2table                      text    html    latex           chm
  probes2tableBM                    text    html    latex           chm
  tableFilt                         text    html    latex           chm
  vennCounts2                       text    html    latex   example chm
  vennSelect                        text    html    latex           chm
  vennSelectBM                      text    html    latex           chm
  vennSelectFC                      text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.0-bioc\meat\affycoretools\chm\affycoretools.chm





Compile time: 0 minutes, 0 seconds

33	Topics

53	Local links

0	Internet links

1	Graphic





Created e:\biocbld\bbs-2.0-bioc\meat\affycoretools\chm\affycoretools.chm, 62,200 bytes

Compression decreased file by 79,954 bytes.

  preparing package affycoretools for lazy loading
Loading required package: affy
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: affyio
Loading required package: limma
Loading required package: GOstats
Loading required package: graph
Loading required package: GO
Loading required package: annotate
Loading required package: RBGL
Loading required package: Category
Loading required package: KEGG
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: Matrix
Loading required package: lattice
Loading required package: biomaRt
Loading required package: XML

Attaching package: 'XML'


	The following object(s) are masked from package:graph :

	 addNode 

Loading required package: RCurl

Attaching package: 'biomaRt'


	The following object(s) are masked from package:annotate :

	 getGO 

Loading required package: gcrma
Loading required package: matchprobes
Loading required package: xtable
Loading required package: annaffy
  adding MD5 sums

* DONE (affycoretools)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'affycoretools_1.8.0.tar.gz'