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RBGL

1.12.0

Li Long
Last Changed Date: 2007-04-24 11:21:48 -0700
Last Changed Rev: 24214
lamb1 Linux (SUSE 10.1) x86_64  OK  OK 
wellington Linux (SUSE 9.2) i686  OK  OK 
churchill Solaris 2.9 sparc  ERROR skipped
lemming Windows Server 2003 (32-bit) x64 [ OK ] TIMEOUT  OK 
liverpool Windows Server 2003 R2 (32-bit) x64  OK  OK  OK 
derby Mac OS X (10.4.9) i686  ERROR skipped
Package: RBGL
Version: 1.12.0
Command: D:\biocbld\bbs-2.0-bioc\R\bin\R.exe CMD build RBGL
RetCode: 0
Time: 205.4 seconds
Status: OK
PackageFile: RBGL_1.12.0.tar.gz

Command output

* checking for file 'RBGL/DESCRIPTION' ... OK
* preparing 'RBGL':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in D:/biocbld/bbs-2.0-bioc/tmpdir/Rinst616469570


---------- Making package RBGL ------------
untarring boost include tree...
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making bbc.d from bbc.cpp
making cliques.d from cliques.cpp
making clusteringCoef.d from clusteringCoef.cpp
making hcs.d from hcs.cpp
making incrConnComp.d from incrConnComp.cpp
making interfaces.d from interfaces.cpp
making layout.d from layout.cpp
making minST.d from minST.cpp
making mincut.d from mincut.cpp
making ordering.d from ordering.cpp
making shortestPath.d from shortestPath.cpp
making sna.d from sna.cpp
making transitive_closure.d from transitive_closure.cpp
making wavefront.d from wavefront.cpp
g++   -Id:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2 -IboostIncl   -c bbc.cpp -o bbc.o
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double, boost::no_property> >, boost::no_property, boost::listS>::config::stored_vertex, _Alloc = std::allocator<boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double, boost::no_property> >, boost::no_property, boost::listS>::config::stored_vertex>]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
g++   -Id:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2 -IboostIncl   -c cliques.cpp -o cliques.o
cliques.cpp: In function `void print_one_clique(oneCliqueType&)':
cliques.cpp:110: warning: comparison between signed and unsigned integer expressions
cliques.cpp: In function `void print_all_cliques(allCliquesType&, char*)':
cliques.cpp:118: warning: comparison between signed and unsigned integer expressions
cliques.cpp: In function `void extend_v2(Graph_ud&, std::vector<int, std::allocator<int> >&, std::vector<int, std::allocator<int> >&, int, int, int&, allCliquesType&)':
cliques.cpp:138: warning: 'fixp' might be used uninitialized in this function
cliques.cpp:139: warning: 'pos' might be used uninitialized in this function
cliques.cpp:139: warning: 's' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex, _Alloc = std::allocator<boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex>]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
cliques.cpp: At global scope:
cliques.cpp:116: warning: 'void print_all_cliques(allCliquesType&, char*)' defined but not used
g++   -Id:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2 -IboostIncl   -c clusteringCoef.cpp -o clusteringCoef.o
clusteringCoef.cpp: In function `int findIndex(int, const std::vector<int, std::allocator<int> >&)':
clusteringCoef.cpp:132: warning: comparison between signed and unsigned integer expressions
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex, _Alloc = std::allocator<boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex>]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
g++   -Id:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2 -IboostIncl   -c hcs.cpp -o hcs.o
hcs.cpp: In function `void output_graph_labels(const V_Label&, const char*)':
hcs.cpp:27: warning: comparison between signed and unsigned integer expressions
hcs.cpp: In function `void build_subgraph(Cluster&, const Graph_ud&, const V_Label&, Graph_ud&, V_Label&)':
hcs.cpp:62: warning: comparison between signed and unsigned integer expressions
hcs.cpp: In function `void remove_vertices(int, const Graph_ud&, const V_Label&, Graph_ud&, V_Label&)':
hcs.cpp:117: warning: comparison between signed and unsigned integer expressions
hcs.cpp: In function `dst cluster_distance(const Graph_ud&, V_Label&, int, V_Label&)':
hcs.cpp:134: warning: comparison between signed and unsigned integer expressions
hcs.cpp:138: warning: comparison between signed and unsigned integer expressions
hcs.cpp: In function `void adopt_singleton(const Graph_ud&, V_Label&, ClusterResult&)':
hcs.cpp:206: warning: comparison between signed and unsigned integer expressions
hcs.cpp: In function `void remove_clusters(ClusterResult&, const Graph_ud&, const V_Label&, Graph_ud&, V_Label&)':
hcs.cpp:248: warning: comparison between signed and unsigned integer expressions
hcs.cpp: In function `void HCS_internal(const Graph_ud&, V_Label&, ClusterResult&)':
hcs.cpp:288: warning: comparison between signed and unsigned integer expressions
hcs.cpp: In function `SEXPREC* HCS_loop(Graph_ud&, V_Label&)':
hcs.cpp:363: warning: comparison between signed and unsigned integer expressions
hcs.cpp:393: warning: comparison between signed and unsigned integer expressions
hcs.cpp:397: warning: comparison between signed and unsigned integer expressions
hcs.cpp:353: warning: unused variable 'found_new_cluster'
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex, _Alloc = std::allocator<boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex>]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, size_t, boost::property<boost::edge_residual_capacity_t, size_t, boost::property<boost::edge_reverse_t, boost::edge_connectivity(VertexListGraph&, OutputIterator)::Tr_edge_desc, boost::no_property> > >, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, size_t, boost::property<boost::edge_residual_capacity_t, size_t, boost::property<boost::edge_reverse_t, boost::edge_connectivity(VertexListGraph&, OutputIterator)::Tr_edge_desc, boost::no_property> > >, boost::no_property, boost::listS>::config::stored_vertex, _Alloc = std::allocator<boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, size_t, boost::property<boost::edge_residual_capacity_t, size_t, boost::property<boost::edge_reverse_t, boost::edge_connectivity(VertexListGraph&, OutputIterator)::Tr_edge_desc, boost::no_property> > >, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, size_t, boost::property<boost::edge_residual_capacity_t, size_t, boost::property<boost::edge_reverse_t, boost::edge_connectivity(VertexListGraph&, OutputIterator)::Tr_edge_desc, boost::no_property> > >, boost::no_property, boost::listS>::config::stored_vertex>]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
boostIncl/boost/graph/edge_connectivity.hpp: In function `typename boost::graph_traits<G>::edges_size_type boost::min_cut(VertexListGraph&, OutputIterator, OutputIterator) [with VertexListGraph = const R_adjacency_list<boost::undirectedS, double>, OutputIterator = std::back_insert_iterator<Cluster>]':
boostIncl/boost/graph/edge_connectivity.hpp:32: warning: 'p' might be used uninitialized in this function
hcs.cpp: At global scope:
hcs.cpp:25: warning: 'void output_graph_labels(const V_Label&, const char*)' defined but not used
hcs.cpp:33: warning: 'void output_graph(const Graph_ud&, const char*)' defined but not used
g++   -Id:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2 -IboostIncl   -c incrConnComp.cpp -o incrConnComp.o
incrConnComp.cpp: In function `SEXPREC* BGL_incr_comp_internal(SEXPREC*, SEXPREC*, SEXPREC*, E_IC_METHOD)':
incrConnComp.cpp:67: warning: comparison between signed and unsigned integer expressions
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex, _Alloc = std::allocator<boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex>]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
g++   -Id:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2 -IboostIncl   -c interfaces.cpp -o interfaces.o
interfaces.cpp: In function `SEXPREC* BGL_articulation_points_U(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
interfaces.cpp:310: warning: comparison between signed and unsigned integer expressions
interfaces.cpp: In function `SEXPREC* BGL_astar_search_D(SEXPREC*, SEXPREC*, SEXPREC*)':
interfaces.cpp:404: warning: 'ansList' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex, _Alloc = std::allocator<boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex>]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
interfaces.cpp: In function `SEXPREC* BGL_tsort_D(SEXPREC*, SEXPREC*, SEXPREC*)':
interfaces.cpp:66: warning: 'tsout' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex, _Alloc = std::allocator<boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex>]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, size_t, boost::property<boost::edge_residual_capacity_t, size_t, boost::property<boost::edge_reverse_t, boost::edge_connectivity(VertexListGraph&, OutputIterator)::Tr_edge_desc, boost::no_property> > >, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, size_t, boost::property<boost::edge_residual_capacity_t, size_t, boost::property<boost::edge_reverse_t, boost::edge_connectivity(VertexListGraph&, OutputIterator)::Tr_edge_desc, boost::no_property> > >, boost::no_property, boost::listS>::config::stored_vertex, _Alloc = std::allocator<boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, size_t, boost::property<boost::edge_residual_capacity_t, size_t, boost::property<boost::edge_reverse_t, boost::edge_connectivity(VertexListGraph&, OutputIterator)::Tr_edge_desc, boost::no_property> > >, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, size_t, boost::property<boost::edge_residual_capacity_t, size_t, boost::property<boost::edge_reverse_t, boost::edge_connectivity(VertexListGraph&, OutputIterator)::Tr_edge_desc, boost::no_property> > >, boost::no_property, boost::listS>::config::stored_vertex>]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
boostIncl/boost/graph/edge_connectivity.hpp: In function `typename boost::graph_traits<G>::degree_size_type boost::edge_connectivity(VertexListGraph&, OutputIterator) [with VertexListGraph = Graph_ud, OutputIterator = std::back_insert_iterator<std::vector<BGL_edge_connectivity_U(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)::Edge, std::allocator<BGL_edge_connectivity_U(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)::Edge> > >]':
boostIncl/boost/graph/edge_connectivity.hpp:32: warning: 'p' might be used uninitialized in this function
g++   -Id:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2 -IboostIncl   -c layout.cpp -o layout.o
layout.cpp: In function `SEXPREC* BGL_gursov_atun_layout(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
layout.cpp:219: warning: unused variable 'w'
layout.cpp:220: warning: unused variable 'h'
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex, _Alloc = std::allocator<boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex>]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>::config::stored_vertex, _Alloc = std::allocator<boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>::config::stored_vertex>]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
g++   -Id:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2 -IboostIncl   -c minST.cpp -o minST.o
minST.cpp: In function `SEXPREC* BGL_PRIM_U(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
minST.cpp:99: warning: comparison between signed and unsigned integer expressions
minST.cpp:103: warning: comparison between signed and unsigned integer expressions
minST.cpp:93: warning: unused variable 'vlist'
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex, _Alloc = std::allocator<boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex>]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex, _Alloc = std::allocator<boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex>]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
g++   -Id:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2 -IboostIncl   -c mincut.cpp -o mincut.o
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::edge_connectivity(VertexListGraph&, OutputIterator)::Tr_edge_desc, boost::no_property> > >, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::edge_connectivity(VertexListGraph&, OutputIterator)::Tr_edge_desc, boost::no_property> > >, boost::no_property, boost::listS>::config::stored_vertex, _Alloc = std::allocator<boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::edge_connectivity(VertexListGraph&, OutputIterator)::Tr_edge_desc, boost::no_property> > >, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::edge_connectivity(VertexListGraph&, OutputIterator)::Tr_edge_desc, boost::no_property> > >, boost::no_property, boost::listS>::config::stored_vertex>]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex, _Alloc = std::allocator<boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex>]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, size_t, boost::property<boost::edge_residual_capacity_t, size_t, boost::property<boost::edge_reverse_t, boost::edge_connectivity(VertexListGraph&, OutputIterator)::Tr_edge_desc, boost::no_property> > >, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, size_t, boost::property<boost::edge_residual_capacity_t, size_t, boost::property<boost::edge_reverse_t, boost::edge_connectivity(VertexListGraph&, OutputIterator)::Tr_edge_desc, boost::no_property> > >, boost::no_property, boost::listS>::config::stored_vertex, _Alloc = std::allocator<boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, size_t, boost::property<boost::edge_residual_capacity_t, size_t, boost::property<boost::edge_reverse_t, boost::edge_connectivity(VertexListGraph&, OutputIterator)::Tr_edge_desc, boost::no_property> > >, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, size_t, boost::property<boost::edge_residual_capacity_t, size_t, boost::property<boost::edge_reverse_t, boost::edge_connectivity(VertexListGraph&, OutputIterator)::Tr_edge_desc, boost::no_property> > >, boost::no_property, boost::listS>::config::stored_vertex>]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
boostIncl/boost/graph/edge_connectivity.hpp: In function `typename boost::graph_traits<G>::edges_size_type boost::min_cut(VertexListGraph&, OutputIterator, OutputIterator) [with VertexListGraph = Graph_ud, OutputIterator = std::back_insert_iterator<std::vector<BGL_min_cut_U::Vertex, std::allocator<BGL_min_cut_U::Vertex> > >]':
boostIncl/boost/graph/edge_connectivity.hpp:32: warning: 'p' might be used uninitialized in this function
g++   -Id:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2 -IboostIncl   -c ordering.cpp -o ordering.o
ordering.cpp: In function `SEXPREC* BGL_king_ordering(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
ordering.cpp:172: warning: unused variable 'delta'
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = boost::detail::adj_list_gen<boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double, boost::no_property> > >, boost::no_property, boost::no_property, boost::listS>, boost::vecS, boost::setS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double, boost::no_property> > >, boost::no_property, boost::no_property, boost::listS>::config::stored_vertex, _Alloc = std::allocator<boost::detail::adj_list_gen<boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double, boost::no_property> > >, boost::no_property, boost::no_property, boost::listS>, boost::vecS, boost::setS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double, boost::no_property> > >, boost::no_property, boost::no_property, boost::listS>::config::stored_vertex>]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex, _Alloc = std::allocator<boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex>]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex, _Alloc = std::allocator<boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex>]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
g++   -Id:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2 -IboostIncl   -c shortestPath.cpp -o shortestPath.o
shortestPath.cpp: In function `SEXPREC* BGL_bellman_ford_shortest_paths(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
shortestPath.cpp:79: warning: unused variable 'j'
shortestPath.cpp: In function `SEXPREC* BGL_floyd_warshall_all_pairs_shortest_paths_D(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
shortestPath.cpp:180: warning: unused variable 'V'
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex, _Alloc = std::allocator<boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex>]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex, _Alloc = std::allocator<boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex>]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>::config::stored_vertex, _Alloc = std::allocator<boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>::config::stored_vertex>]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
g++   -Id:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2 -IboostIncl   -c sna.cpp -o sna.o
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In copy constructor `std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = SubgraphAsSet, _Alloc = std::allocator<SubgraphAsSet>]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h: In member function `std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = SubgraphAsSet, _Alloc = std::allocator<SubgraphAsSet>]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h:715: warning: '__result' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_insert_aux(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, const _Tp&) [with _Tp = CliqueVector, _Alloc = std::allocator<CliqueVector>]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex, _Alloc = std::allocator<boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex>]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, lambdaSets(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)::Tr_edge_desc, boost::no_property> > >, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, lambdaSets(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)::Tr_edge_desc, boost::no_property> > >, boost::no_property, boost::listS>::config::stored_vertex, _Alloc = std::allocator<boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, lambdaSets(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)::Tr_edge_desc, boost::no_property> > >, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, lambdaSets(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)::Tr_edge_desc, boost::no_property> > >, boost::no_property, boost::listS>::config::stored_vertex>]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>::config::stored_vertex, _Alloc = std::allocator<boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>::config::stored_vertex>]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
g++   -Id:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2 -IboostIncl   -c transitive_closure.cpp -o transitive_closure.o
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = std::vector<size_t, std::allocator<size_t> >, _Alloc = std::allocator<std::vector<size_t, std::allocator<size_t> > >]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex, _Alloc = std::allocator<boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex>]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
g++   -Id:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2 -IboostIncl   -c wavefront.cpp -o wavefront.o
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex, _Alloc = std::allocator<boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex>]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
windres -I d:/biocbld/bbs-2.0-bioc/R/include  -i RBGL_res.rc -o RBGL_res.o
g++  -shared -s  -o RBGL.dll RBGL.def bbc.o cliques.o clusteringCoef.o hcs.o incrConnComp.o interfaces.o layout.o minST.o mincut.o ordering.o shortestPath.o sna.o transitive_closure.o wavefront.o RBGL_res.o  -Ld:/biocbld/bbs-2.0-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  save image
Loading required package: graph
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

  installing inst files
  installing data files
  installing man source files
  installing indices
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  installing help
 >>> Building/Updating help pages for package 'RBGL'
     Formats: text html latex example chm 
  FileDep                           text    html    latex   example chm
  RBGL.overview                     text    html    latex           chm
  astarSearch                       text    html    latex   example chm
  bandwidth                         text    html    latex   example chm
  bccluster                         text    html    latex   example chm
  bellman.ford.sp                   text    html    latex   example chm
  betweenness                       text    html    latex   example chm
  bfs                               text    html    latex   example chm
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  clusteringCoefAppr                text    html    latex   example chm
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  connectedComp                     text    html    latex   example chm
  dag.sp                            text    html    latex   example chm
  dijkstra.sp                       text    html    latex   example chm
  edgeConn                          text    html    latex   example chm
  extractPath                       text    html    latex   example chm
  floyd.warshall.all.pairs.sp       text    html    latex   example chm
  gprofile                          text    html    latex   example chm
  graphGenerator                    text    html    latex   example chm
  highlyConnSG                      text    html    latex   example chm
  incrConnComp                      text    html    latex   example chm
  is.triangulated                   text    html    latex   example chm
  isomorphism                       text    html    latex   example chm
  johnson.all.pairs.sp              text    html    latex   example chm
  kCliques                          text    html    latex   example chm
  kCores                            text    html    latex   example chm
  lambdaSets                        text    html    latex   example chm
  layout                            text    html    latex   example chm
  maxClique                         text    html    latex   example chm
  maxFlow                           text    html    latex   example chm
  minCut                            text    html    latex   example chm
  mstree.kruskal                    text    html    latex   example chm
  mstree.prim                       text    html    latex   example chm
  ordering                          text    html    latex   example chm
  removeSelfLoops                   text    html    latex   example chm
  separates                         text    html    latex   example chm
  sp.between                        text    html    latex   example chm
  strongComp                        text    html    latex   example chm
  transClosure                      text    html    latex   example chm
  transitivity                      text    html    latex   example chm
  tsort                             text    html    latex   example chm
  wavefront                         text    html    latex   example chm
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Compiling d:\biocbld\bbs-2.0-bioc\meat\RBGL\chm\RBGL.chm





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Created d:\biocbld\bbs-2.0-bioc\meat\RBGL\chm\RBGL.chm, 61,185 bytes

Compression decreased file by 84,746 bytes.

  adding MD5 sums

* DONE (RBGL)
* creating vignettes ... OK
* cleaning src
* removing junk files
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* checking for empty or unneeded directories
* building 'RBGL_1.12.0.tar.gz'