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EBImage

2.0.0

Oleg Sklyar
Last Changed Date: 2007-04-24 11:48:00 -0700
Last Changed Rev: 24218
lamb1 Linux (SUSE 10.1) x86_64 [ OK ] OK 
wellington Linux (SUSE 9.2) i686  ERROR skipped
churchill Solaris 2.9 sparc  OK  OK 
lemming Windows Server 2003 (32-bit) x64 N O T   S U P P O R T E D
liverpool Windows Server 2003 R2 (32-bit) x64  OK  WARNINGS  OK 
derby Mac OS X (10.4.9) i686  ERROR skipped
Package: EBImage
Version: 2.0.0
Command: /home/biocbuild/bbs-2.0-bioc/R/bin/R CMD build EBImage
RetCode: 0
Time: 11.6 seconds
Status: OK
PackageFile: EBImage_2.0.0.tar.gz

Command output

* checking for file 'EBImage/DESCRIPTION' ... OK
* preparing 'EBImage':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'EBImage' ...
checking for Magick-config... yes
ImageMagick version 6.2.5 found
checking for Magick-config... yes
ImageMagick includes located in -I/usr/include
checking for pkg-config... yes
Compiling with GTK+ support
configure: creating ./config.status
config.status: creating src/Makevars
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.0-bioc/R/include -I/home/biocbuild/bbs-2.0-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/cairo -I/usr/include/freetype2 -I/usr/X11R6/include -I/usr/include/libpng12 -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include   -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include  -fpic  -g -O2 -Wall -c colors.c -o colors.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.0-bioc/R/include -I/home/biocbuild/bbs-2.0-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/cairo -I/usr/include/freetype2 -I/usr/X11R6/include -I/usr/include/libpng12 -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include   -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include  -fpic  -g -O2 -Wall -c conversions.c -o conversions.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.0-bioc/R/include -I/home/biocbuild/bbs-2.0-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/cairo -I/usr/include/freetype2 -I/usr/X11R6/include -I/usr/include/libpng12 -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include   -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include  -fpic  -g -O2 -Wall -c display.c -o display.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.0-bioc/R/include -I/home/biocbuild/bbs-2.0-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/cairo -I/usr/include/freetype2 -I/usr/X11R6/include -I/usr/include/libpng12 -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include   -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include  -fpic  -g -O2 -Wall -c EBImage.c -o EBImage.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.0-bioc/R/include -I/home/biocbuild/bbs-2.0-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/cairo -I/usr/include/freetype2 -I/usr/X11R6/include -I/usr/include/libpng12 -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include   -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include  -fpic  -g -O2 -Wall -c filters_distmap.c -o filters_distmap.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.0-bioc/R/include -I/home/biocbuild/bbs-2.0-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/cairo -I/usr/include/freetype2 -I/usr/X11R6/include -I/usr/include/libpng12 -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include   -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include  -fpic  -g -O2 -Wall -c filters_magick.c -o filters_magick.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.0-bioc/R/include -I/home/biocbuild/bbs-2.0-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/cairo -I/usr/include/freetype2 -I/usr/X11R6/include -I/usr/include/libpng12 -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include   -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include  -fpic  -g -O2 -Wall -c filters_morph.c -o filters_morph.o
g++ -I/home/biocbuild/bbs-2.0-bioc/R/include -I/home/biocbuild/bbs-2.0-bioc/R/include  -I/usr/local/include   -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include  -fpic  -g -O2 -Wall -c filters_propagate.cpp -o filters_propagate.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.0-bioc/R/include -I/home/biocbuild/bbs-2.0-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/cairo -I/usr/include/freetype2 -I/usr/X11R6/include -I/usr/include/libpng12 -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include   -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include  -fpic  -g -O2 -Wall -c filters_thresh.c -o filters_thresh.o
g++ -I/home/biocbuild/bbs-2.0-bioc/R/include -I/home/biocbuild/bbs-2.0-bioc/R/include  -I/usr/local/include   -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include  -fpic  -g -O2 -Wall -c filters_watershed.cpp -o filters_watershed.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.0-bioc/R/include -I/home/biocbuild/bbs-2.0-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/cairo -I/usr/include/freetype2 -I/usr/X11R6/include -I/usr/include/libpng12 -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include   -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include  -fpic  -g -O2 -Wall -c io.c -o io.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.0-bioc/R/include -I/home/biocbuild/bbs-2.0-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/cairo -I/usr/include/freetype2 -I/usr/X11R6/include -I/usr/include/libpng12 -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include   -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include  -fpic  -g -O2 -Wall -c object_counting.c -o object_counting.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.0-bioc/R/include -I/home/biocbuild/bbs-2.0-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/cairo -I/usr/include/freetype2 -I/usr/X11R6/include -I/usr/include/libpng12 -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include   -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include  -fpic  -g -O2 -Wall -c tools.c -o tools.o
g++ -shared -L/usr/local/lib64 -o EBImage.so colors.o conversions.o display.o EBImage.o filters_distmap.o filters_magick.o filters_morph.o filters_propagate.o filters_thresh.o filters_watershed.o io.o object_counting.o tools.o -L/usr/X11R6/lib64 -L/opt/gnome/lib64 -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgdk_pixbuf-2.0 -lpangocairo-1.0 -lpango-1.0 -lcairo -lgobject-2.0 -lgmodule-2.0 -ldl -lglib-2.0 -lfreetype -lfontconfig -lXrender -lX11 -lXext -lpng12 -lz -lglitz -lm   -L/usr/lib64 -L/usr/lib64 -L/usr/X11R6/lib64 -lfreetype -lz -L/usr/lib -lMagick -llcms -ltiff -lfreetype -ljpeg -lXext -lSM -lICE -lX11 -lXt -lbz2 -lz -lpthread -lm -lpthread     -L/home/biocbuild/bbs-2.0-bioc/R/lib -lR
** R
** inst
** save image
** help
 >>> Building/Updating help pages for package 'EBImage'
     Formats: text html latex example 
  EBImage-package                   text    html    latex
  Image.generic.methods             text    html    latex
  channel                           text    html    latex   example
  class.Image                       text    html    latex   example
  constructors                      text    html    latex
  denoising                         text    html    latex
  display                           text    html    latex   example
  distmap                           text    html    latex   example
  enhancing                         text    html    latex
  getObjects                        text    html    latex   example
  input-output                      text    html    latex   example
  internals                         text    html    latex
  matchObjects                      text    html    latex
  morphology                        text    html    latex   example
  normalize                         text    html    latex   example
  paintObjects                      text    html    latex   example
  propagate                         text    html    latex   example
  rmObjects                         text    html    latex   example
  segmenting                        text    html    latex
  thresholding                      text    html    latex   example
  tile                              text    html    latex
  transformations                   text    html    latex
  watershed                         text    html    latex   example
** building package indices ...
* DONE (EBImage)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'EBImage_2.0.0.tar.gz'