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Package 189/208OSArchBUILDCHECKBUILD BIN

SNPchip

0.1.44

Robert Scharpf
Linux (SUSE 9.2) x86_64 ERROR skipped
Linux (SUSE 10.1) x86_64 ERROR skipped
Linux (SUSE 9.2) i686[ ERROR ]skipped
Solaris 2.9 sparc ERROR skipped
Windows Server 2003 x86_64 ERROR skippedskipped
Windows Server 2003 NA ERROR skippedskipped
Mac OS X (10.4.6) i686 ERROR skipped
Package: SNPchip
Version: 0.1.44
Command: /loc/biocbuild/2.0d/R/bin/R CMD build SNPchip
RetCode: 1
Time: 44.8 seconds
Status: ERROR
PackageFile: None

Command output

* checking for file 'SNPchip/DESCRIPTION' ... OK
* preparing 'SNPchip':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'SNPchip' ...
** R
** data
** inst
** save image
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: geneplotter
Loading required package: annotate
Loading required package: lattice
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Loading required package: oligo
Loading required package: affyio
Loading required package: splines

Welcome to the oligo Package!

    This package is under development,
    and therefore its documentation is
    to be improved. Please contact Benilton
    at bcarvalh  jhsph  edu,
    in case you need further help.
Creating a new generic function for "summary" in "SNPchip"
** help
 >>> Building/Updating help pages for package 'SNPchip'
     Formats: text html latex example 
  AnnotatedSnpCallSet-class         text    html    latex   example
  AnnotatedSnpCopyNumberSet-class   text    html    latex   example
  AnnotatedSnpSet-class             text    html    latex   example
  AnnotatedSnpSetList-class         text    html    latex   example
  accessors                         text    html    latex   example
  addFeatureData-method             text    html    latex
  alleleA-methods                   text    html    latex
  alleleB-methods                   text    html    latex
  annSnpset                         text    html    latex   example
  chromosome-methods                text    html    latex
  chromosomeAnnotation-methods      text    html    latex
  chromosomeAnnotation              text    html    latex   example
  coerce-methods                    text    html    latex
  copyNumber-methods                text    html    latex
  cytoband                          text    html    latex   example
  dbSnpId-methods                   text    html    latex
  enzyme-methods                    text    html    latex
  hapmap                            text    html    latex   example
  initialize-methods                text    html    latex
  plotChromosome-methods            text    html    latex
  plotCytoband-methods              text    html    latex
  plotSnp-methods                   text    html    latex   example
  position-methods                  text    html    latex
  probeSetId-methods                text    html    latex
  show-methods                      text    html    latex
  smoothSnp-methods                 text    html    latex
  snpSetList-methods                text    html    latex
  summary-methods                   text    html    latex
** building package indices ...
* DONE (SNPchip)
* creating vignettes ... ERROR
Loading required package: Biobase

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: geneplotter
Loading required package: annotate
Loading required package: lattice
Loading required package: oligo
Loading required package: affyio
Loading required package: splines

Welcome to the oligo Package!

    This package is under development,
    and therefore its documentation is
    to be improved. Please contact Benilton
    at bcarvalh  jhsph  edu,
    in case you need further help.

Error:  chunk 22 (label=smoothSnp) 
Error in assayDataNew(calls = calls, callsConfidence = callsConfidence,  : 
	featureNames differ between AssayData members
Error in buildVignettes(dir = ".") : Error:  chunk 22 (label=smoothSnp) 
Error in assayDataNew(calls = calls, callsConfidence = callsConfidence,  : 
	featureNames differ between AssayData members
Execution halted