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prism

0.1.1

Raphael Gottardo
Linux (SUSE 9.2) x86_64 ERROR skipped
Linux (SUSE 10.1) x86_64 ERROR skipped
Linux (SUSE 9.2) i686 ERROR skipped
Solaris 2.9 sparc OK  WARNINGS 
Windows Server 2003 x86_64 ERROR skippedskipped
Windows Server 2003 NA[ ERROR ]skippedskipped
Mac OS X (10.4.6) i686 ERROR skipped
Package: prism
Version: 0.1.1
Command: E:\biocbld\2.0d\R\bin\R.exe CMD build prism
RetCode: 1
Time: 11.6 seconds
Status: ERROR
PackageFile: None

Command output

* checking for file 'prism/DESCRIPTION' ... OK
* preparing 'prism':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in E:/biocbld/2.0d/tmpdir/Rinst101643356


---------- Making package prism ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making bisegment.d from bisegment.c
making find_grid.d from find_grid.c
making util.d from util.c
gcc   -Ie:/biocbld/2.0d/R/include  -Wall -O2 -std=gnu99   -c bisegment.c -o bisegment.o
bisegment.c: In function `R_link_bisegment':
bisegment.c:136: warning: unused variable `bi'
bisegment.c:136: warning: unused variable `bj'
bisegment.c:144: warning: unused variable `gamma_start'
bisegment.c: In function `bisegment':
bisegment.c:314: warning: unused variable `kk'
bisegment.c:314: warning: unused variable `iii'
bisegment.c:314: warning: unused variable `jjj'
bisegment.c:314: warning: unused variable `l'
bisegment.c:321: warning: unused variable `stop_criteria_M'
bisegment.c:325: warning: unused variable `i_start'
bisegment.c:325: warning: unused variable `i_end'
bisegment.c:326: warning: unused variable `j_start'
bisegment.c:326: warning: unused variable `j_end'
bisegment.c: In function `initialize_image':
bisegment.c:633: warning: suggest parentheses around comparison in operand of &
bisegment.c: In function `up_date_beta_mrf':
bisegment.c:780: warning: suggest parentheses around comparison in operand of &
bisegment.c:780: warning: suggest parentheses around comparison in operand of &
bisegment.c:780: warning: suggest parentheses around comparison in operand of &
bisegment.c:781: warning: suggest parentheses around comparison in operand of &
bisegment.c:784: warning: suggest parentheses around comparison in operand of &
bisegment.c:789: warning: suggest parentheses around comparison in operand of &
bisegment.c:794: warning: suggest parentheses around comparison in operand of &
bisegment.c: In function `up_date_w':
bisegment.c:873: warning: unused variable `nb_pixel'
bisegment.c:874: warning: unused variable `sum_res'
bisegment.c: In function `compute_difference':
bisegment.c:887: warning: unused variable `i'
bisegment.c: In function `compute_uncertainty':
bisegment.c:901: warning: unused variable `iii'
bisegment.c:901: warning: unused variable `jjj'
bisegment.c:904: warning: unused variable `nb_flagged'
bisegment.c: In function `bisegment_mcmc':
bisegment.c:981: warning: unused variable `countrho'
bisegment.c:982: warning: unused variable `iii'
bisegment.c:982: warning: unused variable `jjj'
bisegment.c:982: warning: unused variable `l'
bisegment.c:988: warning: unused variable `nb_spot'
bisegment.c:989: warning: unused variable `log_like_rho'
bisegment.c:990: warning: unused variable `log_like_rho_new'
bisegment.c:991: warning: unused variable `rho_new'
bisegment.c:1000: warning: unused variable `nb_pix'
bisegment.c: In function `slice_sampling_lambda_eps':
bisegment.c:1830: warning: suggest parentheses around comparison in operand of &
bisegment.c:1839: warning: suggest parentheses around comparison in operand of &
bisegment.c: In function `change_resolution_mcmc':
bisegment.c:2120: warning: suggest parentheses around comparison in operand of &
bisegment.c:2122: warning: suggest parentheses around comparison in operand of &
bisegment.c:2124: warning: suggest parentheses around comparison in operand of &
bisegment.c: In function `bisegment':
bisegment.c:460: warning: control reaches end of non-void function
bisegment.c: In function `bisegment_mcmc':
bisegment.c:1285: warning: control reaches end of non-void function
gcc   -Ie:/biocbld/2.0d/R/include  -Wall -O2 -std=gnu99   -c find_grid.c -o find_grid.o
find_grid.c: In function `find_grid':
find_grid.c:12: warning: 'index_min' might be used uninitialized in this function
gcc   -Ie:/biocbld/2.0d/R/include  -Wall -O2 -std=gnu99   -c util.c -o util.o
util.c: In function `qr_solve':
util.c:623: warning: implicit declaration of function `dqrdc2_'
util.c:638: warning: implicit declaration of function `dqrcf_'
util.c:602: warning: unused variable `vmax'
util.c: In function `inverse':
util.c:661: warning: unused variable `j'
util.c: In function `product_mat_vec':
util.c:708: warning: unused variable `k'
util.c: In function `slice_sampling_phi':
util.c:816: warning: suggest parentheses around comparison in operand of &
util.c:824: warning: suggest parentheses around comparison in operand of &
util.c:798: warning: unused variable `v'
util.c: In function `slice_sampling_lxi':
util.c:871: warning: suggest parentheses around comparison in operand of &
util.c:880: warning: suggest parentheses around comparison in operand of &
util.c: In function `slice_sampling_lambda':
util.c:943: warning: suggest parentheses around comparison in operand of &
util.c:952: warning: suggest parentheses around comparison in operand of &
util.c: In function `slice_sampling_b':
util.c:1008: warning: suggest parentheses around comparison in operand of &
util.c:1016: warning: suggest parentheses around comparison in operand of &
util.c: In function `slice_sampling_a':
util.c:1063: warning: suggest parentheses around comparison in operand of &
util.c:1071: warning: suggest parentheses around comparison in operand of &
util.c: In function `slice_sampling_lxi':
util.c:856: warning: 'J' might be used uninitialized in this function
util.c:856: warning: 'K' might be used uninitialized in this function
windres --include-dir e:/biocbld/2.0d/R/include  -i prism_res.rc -o prism_res.o
gcc  -shared -s  -o prism.dll prism.def bisegment.o find_grid.o util.o prism_res.o  -Le:/biocbld/2.0d/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  save image
Loading required package: EBImage
Error: package 'EBImage' could not be loaded
In addition: Warning message:
there is no package called 'EBImage' in: library(pkg, character.only = TRUE, logical = TRUE, lib.loc = lib.loc) 
Execution halted
execution of package source for 'prism' failed
make[2]: *** [E:/biocbld/2.0d/tmpdir/Rinst101643356/prism/R/prism] Error 1
make[1]: *** [all] Error 2
make: *** [pkg-prism] Error 2
*** Installation of prism failed ***

Removing 'E:/biocbld/2.0d/tmpdir/Rinst101643356/prism'
 ERROR
Installation failed.
Removing 'E:/biocbld/2.0d/tmpdir/Rinst101643356'