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Rgraphviz

1.13.4

Jeff Gentry
Linux (SUSE 9.2) x86_64 ERROR skipped
Linux (SUSE 10.1) x86_64 OK  WARNINGS 
Linux (SUSE 9.2) i686 ERROR skipped
Solaris 2.9 sparc ERROR skipped
Windows Server 2003 x86_64 ERROR skippedskipped
Windows Server 2003 NA[ ERROR ]skippedskipped
Mac OS X (10.4.6) i686 OK  ERROR 
Package: Rgraphviz
Version: 1.13.4
Command: E:\biocbld\2.0d\R\bin\R.exe CMD build Rgraphviz
RetCode: 1
Time: 10.5 seconds
Status: ERROR
PackageFile: None

Command output

* checking for file 'Rgraphviz/DESCRIPTION' ... OK
* preparing 'Rgraphviz':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in E:/biocbld/2.0d/tmpdir/Rinst441618234


---------- Making package Rgraphviz ------------

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************

  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making LL_funcs.d from LL_funcs.c
making Rgraphviz.d from Rgraphviz.c
making RgraphvizInit.d from RgraphvizInit.c
making agopen.d from agopen.c
making agread.d from agread.c
making agwrite.d from agwrite.c
making bezier.d from bezier.c
making buildEdgeList.d from buildEdgeList.c
making buildNodeList.d from buildNodeList.c
making doLayout.d from doLayout.c
making graphvizVersion.d from graphvizVersion.c
making init.d from init.c
gcc  -I../graphviz-win32/include -DGRAPHVIZ_2_2_TO_2_3 -DWin32 -Ie:/biocbld/2.0d/R/include  -Wall -O2 -std=gnu99   -c LL_funcs.c -o LL_funcs.o
In file included from ../graphviz-win32/include/render.h:53,
                 from common.h:17,
                 from LL_funcs.c:1:
../graphviz-win32/include/macros.h:41:1: warning: "NEW" redefined
In file included from common.h:5,
                 from LL_funcs.c:1:
e:/biocbld/2.0d/R/include/Rdefines.h:143:1: warning: this is the location of the previous definition
LL_funcs.c: In function `Rgraphviz_getDefAttrsGraph':
LL_funcs.c:67: warning: unused variable `at_name'
LL_funcs.c:67: warning: unused variable `at_val'
LL_funcs.c: In function `Rgraphviz_setAttrsGraph':
LL_funcs.c:121: warning: implicit declaration of function `agsafeset'
LL_funcs.c: In function `Rgraphviz_toFile':
LL_funcs.c:445: warning: implicit declaration of function `gvLayout'
LL_funcs.c:447: warning: implicit declaration of function `gvRenderFilename'
LL_funcs.c:449: warning: implicit declaration of function `gvFreeLayout'
LL_funcs.c:445: warning: unused variable `i1'
LL_funcs.c:447: warning: unused variable `i2'
LL_funcs.c:449: warning: unused variable `i3'
LL_funcs.c: In function `Rgraphviz_getDefAttrsEdge':
LL_funcs.c:368: warning: 'val' might be used uninitialized in this function
gcc  -I../graphviz-win32/include -DGRAPHVIZ_2_2_TO_2_3 -DWin32 -Ie:/biocbld/2.0d/R/include  -Wall -O2 -std=gnu99   -c Rgraphviz.c -o Rgraphviz.o
In file included from ../graphviz-win32/include/render.h:53,
                 from common.h:17,
                 from Rgraphviz.c:1:
../graphviz-win32/include/macros.h:41:1: warning: "NEW" redefined
In file included from common.h:5,
                 from Rgraphviz.c:1:
e:/biocbld/2.0d/R/include/Rdefines.h:143:1: warning: this is the location of the previous definition
gcc  -I../graphviz-win32/include -DGRAPHVIZ_2_2_TO_2_3 -DWin32 -Ie:/biocbld/2.0d/R/include  -Wall -O2 -std=gnu99   -c RgraphvizInit.c -o RgraphvizInit.o
In file included from ../graphviz-win32/include/render.h:53,
                 from common.h:17,
                 from RgraphvizInit.c:1:
../graphviz-win32/include/macros.h:41:1: warning: "NEW" redefined
In file included from common.h:5,
                 from RgraphvizInit.c:1:
e:/biocbld/2.0d/R/include/Rdefines.h:143:1: warning: this is the location of the previous definition
gcc  -I../graphviz-win32/include -DGRAPHVIZ_2_2_TO_2_3 -DWin32 -Ie:/biocbld/2.0d/R/include  -Wall -O2 -std=gnu99   -c agopen.c -o agopen.o
In file included from ../graphviz-win32/include/render.h:53,
                 from common.h:17,
                 from agopen.c:1:
../graphviz-win32/include/macros.h:41:1: warning: "NEW" redefined
In file included from common.h:5,
                 from agopen.c:1:
e:/biocbld/2.0d/R/include/Rdefines.h:143:1: warning: this is the location of the previous definition
gcc  -I../graphviz-win32/include -DGRAPHVIZ_2_2_TO_2_3 -DWin32 -Ie:/biocbld/2.0d/R/include  -Wall -O2 -std=gnu99   -c agread.c -o agread.o
In file included from ../graphviz-win32/include/render.h:53,
                 from common.h:17,
                 from agread.c:1:
../graphviz-win32/include/macros.h:41:1: warning: "NEW" redefined
In file included from common.h:5,
                 from agread.c:1:
e:/biocbld/2.0d/R/include/Rdefines.h:143:1: warning: this is the location of the previous definition
gcc  -I../graphviz-win32/include -DGRAPHVIZ_2_2_TO_2_3 -DWin32 -Ie:/biocbld/2.0d/R/include  -Wall -O2 -std=gnu99   -c agwrite.c -o agwrite.o
In file included from ../graphviz-win32/include/render.h:53,
                 from common.h:17,
                 from agwrite.c:1:
../graphviz-win32/include/macros.h:41:1: warning: "NEW" redefined
In file included from common.h:5,
                 from agwrite.c:1:
e:/biocbld/2.0d/R/include/Rdefines.h:143:1: warning: this is the location of the previous definition
gcc  -I../graphviz-win32/include -DGRAPHVIZ_2_2_TO_2_3 -DWin32 -Ie:/biocbld/2.0d/R/include  -Wall -O2 -std=gnu99   -c bezier.c -o bezier.o
In file included from ../graphviz-win32/include/render.h:53,
                 from common.h:17,
                 from bezier.c:1:
../graphviz-win32/include/macros.h:41:1: warning: "NEW" redefined
In file included from common.h:5,
                 from bezier.c:1:
e:/biocbld/2.0d/R/include/Rdefines.h:143:1: warning: this is the location of the previous definition
gcc  -I../graphviz-win32/include -DGRAPHVIZ_2_2_TO_2_3 -DWin32 -Ie:/biocbld/2.0d/R/include  -Wall -O2 -std=gnu99   -c buildEdgeList.c -o buildEdgeList.o
In file included from ../graphviz-win32/include/render.h:53,
                 from common.h:17,
                 from buildEdgeList.c:1:
../graphviz-win32/include/macros.h:41:1: warning: "NEW" redefined
In file included from common.h:5,
                 from buildEdgeList.c:1:
e:/biocbld/2.0d/R/include/Rdefines.h:143:1: warning: this is the location of the previous definition
gcc  -I../graphviz-win32/include -DGRAPHVIZ_2_2_TO_2_3 -DWin32 -Ie:/biocbld/2.0d/R/include  -Wall -O2 -std=gnu99   -c buildNodeList.c -o buildNodeList.o
In file included from ../graphviz-win32/include/render.h:53,
                 from common.h:17,
                 from buildNodeList.c:1:
../graphviz-win32/include/macros.h:41:1: warning: "NEW" redefined
In file included from common.h:5,
                 from buildNodeList.c:1:
e:/biocbld/2.0d/R/include/Rdefines.h:143:1: warning: this is the location of the previous definition
gcc  -I../graphviz-win32/include -DGRAPHVIZ_2_2_TO_2_3 -DWin32 -Ie:/biocbld/2.0d/R/include  -Wall -O2 -std=gnu99   -c doLayout.c -o doLayout.o
In file included from ../graphviz-win32/include/render.h:53,
                 from common.h:17,
                 from doLayout.c:1:
../graphviz-win32/include/macros.h:41:1: warning: "NEW" redefined
In file included from common.h:5,
                 from doLayout.c:1:
e:/biocbld/2.0d/R/include/Rdefines.h:143:1: warning: this is the location of the previous definition
doLayout.c: In function `Rgraphviz_doLayout':
doLayout.c:330: warning: implicit declaration of function `gvLayout'
doLayout.c:330: error: `layouts' undeclared (first use in this function)
doLayout.c:330: error: (Each undeclared identifier is reported only once
doLayout.c:330: error: for each function it appears in.)
make[3]: *** [doLayout.o] Error 1
make[2]: *** [srcDynlib] Error 2
make[1]: *** [all] Error 2
make: *** [pkg-Rgraphviz] Error 2
*** Installation of Rgraphviz failed ***

Removing 'E:/biocbld/2.0d/tmpdir/Rinst441618234/Rgraphviz'
 ERROR
Installation failed.
Removing 'E:/biocbld/2.0d/tmpdir/Rinst441618234'