Package: matchprobes

Version: 1.7.3

Command: D:\biocbld\2.0d\R\bin\R.exe CMD build matchprobes

RetCode: 1

Time: 27.5 seconds

Status: ERROR

PackageFile: None

* checking for file 'matchprobes/DESCRIPTION' ... OK
* preparing 'matchprobes':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in D:/biocbld/2.0d/tmpdir/Rinst582812759


---------- Making package matchprobes ------------
  adding build stamp to DESCRIPTION
  making DLL ...
making matchprobes.d from matchprobes.c
making strutils.d from strutils.c
gcc   -Id:/biocbld/2.0d/R/include  -Wall -O2 -std=gnu99   -c matchprobes.c -o matchprobes.o
gcc   -Id:/biocbld/2.0d/R/include  -Wall -O2 -std=gnu99   -c strutils.c -o strutils.o
windres --include-dir d:/biocbld/2.0d/R/include  -i matchprobes_res.rc -o matchprobes_res.o
gcc  -shared -s  -o matchprobes.dll matchprobes.def matchprobes.o strutils.o matchprobes_res.o  -Ld:/biocbld/2.0d/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  save image
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: affy
Loading required package: affyio
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'matchprobes'
     Formats: text html latex example chm 
  basecontent                       text    html    latex   example chm
  combineAffyBatch                  text    html    latex   example chm
  complementSeq                     text    html    latex   example chm
  getProbeDataAffy                  text    html    latex   example chm
  getProbeData_1lq                  text    html    latex   example chm
  longestConsecutive                text    html    latex   example chm
  makeProbePackage                  text    html    latex   example chm
  matchprobes                       text    html    latex   example chm
  print.probetable                  text    html    latex   example chm
  reverseSeq                        text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\2.0d\Rpacks\matchprobes\chm\matchprobes.chm





Compile time: 0 minutes, 0 seconds

11	Topics

31	Local links

1	Internet link

1	Graphic





Created d:\biocbld\2.0d\Rpacks\matchprobes\chm\matchprobes.chm, 29,952 bytes

Compression decreased file by 7,754 bytes.

  adding MD5 sums

* DONE (matchprobes)
* creating vignettes ... ERROR
Loading required package: Biobase

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: affy
Loading required package: affyio

Attaching package: 'hu6800cdf'


	The following object(s) are masked from package:hgu95av2cdf :

	 i2xy 

	The following object(s) are masked from package:hgu95av2cdf :

	 xy2i 


Error:  chunk 8 (label=loadcel) 
Error: D:/biocbld/2.0d/tmpdir/Rinst582812759/matchprobes/extdata/118T1.cel.gz does not appear to be a CEL file.
 This can be caused by subtle errors:
 1.) Passing a filename argument without using filename=
 2.) Mis-spelling an argument (e.g., 'samepleNames').
 3.) The obvious - passing a non-CEL file.
Error in buildVignettes(dir = ".") : Error:  chunk 8 (label=loadcel) 
Error: D:/biocbld/2.0d/tmpdir/Rinst582812759/matchprobes/extdata/118T1.cel.gz does not appear to be a CEL file.
 This can be caused by subtle errors:
 1.) Passing a filename argument without using filename=
 2.) Mis-spelling an argument (e.g., 'samepleNames').
 3.) The obvious - passing a non-CEL file.
Execution halted