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Package 57/208OSArchBUILDCHECKBUILD BIN

exprDB

0.3.0

Byron Ellis
Linux (SUSE 9.2) x86_64[ OK ] ERROR 
Linux (SUSE 10.1) x86_64 OK  ERROR 
Linux (SUSE 9.2) i686 OK  ERROR 
Solaris 2.9 sparc ERROR skipped
Windows Server 2003 x86_64 ERROR skippedskipped
Windows Server 2003 NA ERROR skippedskipped
Mac OS X (10.4.6) i686 ERROR skipped
Package: exprDB
Version: 0.3.0
Command: /loc/biocbuild/2.0d/R/bin/R CMD build exprDB
RetCode: 0
Time: 12.8 seconds
Status: OK
PackageFile: exprDB_0.3.0.tar.gz

Command output

* checking for file 'exprDB/DESCRIPTION' ... OK
* preparing 'exprDB':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'exprDB' ...
checking for gcc... gcc
checking for C compiler default output... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking how to run the C preprocessor... gcc -E
checking for egrep... grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for BerkeleyDB... yes
checking db.h usability... yes
checking db.h presence... yes
checking for db.h... yes
checking whether compiling/linking BerkeleyDB code works... yes
checking BerkeleyDB in /usr... ok
configure: creating ./config.status
config.status: creating src/Makevars
** libs
gcc -std=gnu99 -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include -I/usr/include -I/usr/local/include   -Wall  -fpic  -g -O2 -Wall -c exprdb_apply.c -o exprdb_apply.o
gcc -std=gnu99 -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include -I/usr/include -I/usr/local/include   -Wall  -fpic  -g -O2 -Wall -c exprdb.c -o exprdb.o
gcc -std=gnu99 -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include -I/usr/include -I/usr/local/include   -Wall  -fpic  -g -O2 -Wall -c exprdb_r.c -o exprdb_r.o
gcc -std=gnu99 -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include -I/usr/include -I/usr/local/include   -Wall  -fpic  -g -O2 -Wall -c exprdb_select.c -o exprdb_select.o
gcc -std=gnu99 -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include -I/usr/include -I/usr/local/include   -Wall  -fpic  -g -O2 -Wall -c express.c -o express.o
express.c: In function `_int_ensure_extents':
express.c:54: warning: unused variable `ret'
express.c: In function `_int_expr':
express.c:70: warning: implicit declaration of function `R_alloc'
express.c:70: warning: cast to pointer from integer of different size
express.c: In function `exp_open':
express.c:120: warning: cast to pointer from integer of different size
express.c:122: warning: cast to pointer from integer of different size
express.c:123: warning: cast to pointer from integer of different size
express.c: In function `exp_get_cursor':
express.c:381: warning: cast to pointer from integer of different size
express.c: In function `express_create':
express.c:422: warning: cast to pointer from integer of different size
gcc -std=gnu99 -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include -I/usr/include -I/usr/local/include   -Wall  -fpic  -g -O2 -Wall -c r_col.c -o r_col.o
r_col.c: In function `rcol_assoc':
r_col.c:4: warning: initialization from incompatible pointer type
gcc -std=gnu99 -shared -L/usr/local/lib64 -o exprDB.so exprdb_apply.o exprdb.o exprdb_r.o exprdb_select.o express.o r_col.o -L/usr/lib -ldb  
/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.4/../../../../x86_64-suse-linux/bin/ld: skipping incompatible /usr/lib/libc.so when searching for -lc
/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.4/../../../../x86_64-suse-linux/bin/ld: skipping incompatible /usr/lib/libc.a when searching for -lc
** R
** inst
WARNING: use of install.R is no longer supported
** help
 >>> Building/Updating help pages for package 'exprDB'
     Formats: text html latex example 
  exprDB-class                      text    html    latex   example
  exprdb.ptr-class                  text    html    latex
** building package indices ...
* DONE (exprDB)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'exprDB_0.3.0.tar.gz'