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Package 177/208OSArchBUILDCHECKBUILD BIN

SAGElyzer

1.13.0

Jianhua Zhang
Linux (SUSE 9.2) x86_64 OK  WARNINGS 
Linux (SUSE 10.1) x86_64 OK  WARNINGS 
Linux (SUSE 9.2) i686 OK  WARNINGS 
Solaris 2.9 sparc OK  WARNINGS 
Windows Server 2003 x86_64 OK  ERROR  OK 
Windows Server 2003 NA OK  ERROR  OK 
Mac OS X (10.4.6) i686 OK [ ERROR ]
Package: SAGElyzer
Version: 1.13.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check SAGElyzer_1.13.0.tar.gz
RetCode: 1
Time: 23.6 seconds
Status: ERROR
CheckDir: SAGElyzer.Rcheck
Warnings: NA

Command output

* checking for working latex ... OK
* using log directory '/Users/biocbuild/2.0d/Rpacks/SAGElyzer.Rcheck'
* using R version 2.5.0 Under development (unstable) (2006-10-21 r39702)
* checking for file 'SAGElyzer/DESCRIPTION' ... OK
* this is package 'SAGElyzer' version '1.13.0'
* checking package dependencies ... WARNING
'library' or 'require' calls not declared from:
  RODBC Rdbi RdbiPgSQL Biobase
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking if this is a source package ... OK
* checking whether package 'SAGElyzer' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... ERROR
Loading required package: AnnBuilder
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: XML
Loading required package: annotate
Loading required package: tkWidgets
Loading required package: widgetTools
Loading Tcl/Tk interface ... done
Loading required package: DynDoc
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: Rdbi
Loading required package: RdbiPgSQL
Error in fun(...) : Package RdbiPgSQL unavailable
In addition: Warning message:
there is no package called 'RdbiPgSQL' in: library(package, lib.loc = lib.loc, character.only = TRUE, logical = TRUE,  
Error: .onLoad failed in 'loadNamespace' for 'SAGElyzer'
Error: package/namespace load failed for 'SAGElyzer'
Execution halted

It looks like this package has a loading problem: see the messages for
details.

SAGElyzer.Rcheck/00install.out:

* Installing *source* package 'SAGElyzer' ...
** R
** data
** exec
** inst
** preparing package for lazy loading
Loading required package: AnnBuilder
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: XML
Loading required package: annotate
Loading required package: tkWidgets
Loading required package: widgetTools
Loading Tcl/Tk interface ... done
Loading required package: DynDoc
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
** help
 >>> Building/Updating help pages for package 'SAGElyzer'
     Formats: text html latex example 
  SAGELyzer                         text    html    latex   example
  SAGEMapper                        text    html    latex   example
  SAGEToolTips                      text    html    latex   example
  SAGEWidget                        text    html    latex   example
  con4Win                           text    html    latex   example
  getGEOSAGE                        text    html    latex   example
  getNormFactor                     text    html    latex   example
  getTargetRow                      text    html    latex   example
  mergeSAGE                         text    html    latex   example
  mergeSAGEWidget                   text    html    latex   example
  querySAGE                         text    html    latex   example
** building package indices ...
* DONE (SAGElyzer)