Package: MCRestimate

Version: 1.9.1

Command: /loc/biocbuild/2.0d/R/bin/R CMD check MCRestimate_1.9.1.tar.gz

RetCode: 0

Time: 376.8 seconds

Status: WARNINGS

CheckDir: MCRestimate.Rcheck

Warnings: 1

* checking for working latex ... OK
* using log directory '/loc/biocbuild/2.0d/Rpacks/MCRestimate.Rcheck'
* using R version 2.5.0 Under development (unstable) (2006-12-05 r40126)
* checking for file 'MCRestimate/DESCRIPTION' ... OK
* this is package 'MCRestimate' version '1.9.1'
* checking package dependencies ... WARNING
'library' or 'require' calls not declared from:
  genefilter ROC rfe gpls
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking if this is a source package ... OK
* checking whether package 'MCRestimate' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating MCRestimate-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating MCRestimate-manual.tex ... OK
* checking MCRestimate-manual.tex ... OK

WARNING: There was 1 warning, see
  /loc/biocbuild/2.0d/Rpacks/MCRestimate.Rcheck/00check.log
for details

* Installing *source* package 'MCRestimate' ...
** R
** inst
** save image
Loading required package: e1071
Loading required package: class
Loading required package: pamr
Loading required package: randomForest
randomForest 4.5-16 
Type rfNews() to see new features/changes/bug fixes.
Loading required package: RColorBrewer
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: golubEsets
** help
 >>> Building/Updating help pages for package 'MCRestimate'
     Formats: text html latex example 
  ClassifierBuild                   text    html    latex   example
  MCRconfusion                      text    html    latex   example
  MCRestimate                       text    html    latex   example
  MCRestimateMerge                  text    html    latex   example
  PLR                               text    html    latex   example
  PLR.add.fkt                       text    html    latex   example
  SVM.OVA.wrap                      text    html    latex   example
  class.factor.format               text    html    latex   example
  gene.reduction.fkt                text    html    latex   example
  important.variable.names          text    html    latex   example
  intersectList                     text    html    latex   example
  plot.MCRestimate                  text    html    latex   example
  replace.NA                        text    html    latex   example
  select.NA.elements                text    html    latex   example
  whatiscorrect                     text    html    latex   example
  wrapper.fkt                       text    html    latex   example
** building package indices ...
* DONE (MCRestimate)