1.5.007Oleg Sklyar | Linux (SUSE 9.2) | x86_64 | ERROR | skipped | |
| Linux (SUSE 10.1) | x86_64 | ERROR | skipped | |
| Linux (SUSE 9.2) | i686 | ERROR | skipped | |
| Solaris 2.9 | sparc | OK | [ WARNINGS ] | |
| Windows Server 2003 | x86_64 | ERROR | skipped | skipped |
| Windows Server 2003 | NA | ERROR | skipped | skipped |
| Mac OS X (10.4.6) | i686 | ERROR | skipped | |
* checking for working latex ... OK
* using log directory '/loc/biocbuild/2.0d/Rpacks/EBImage.Rcheck'
* using R version 2.5.0 Under development (unstable) (2006-12-05 r40126)
* checking for file 'EBImage/DESCRIPTION' ... OK
* this is package 'EBImage' version '1.5.007'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'EBImage' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... WARNING
Loading required package: methods
Error in paste("... EBImage", packageDescription("EBImage", fields = "Version"), :
could not find function "packageDescription"
Error: .onLoad failed in 'loadNamespace' for 'EBImage'
Error: package/namespace load failed for 'EBImage'
Execution halted
It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package. All dependencies must be
declared in DESCRIPTION.
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking whether the name space can be loaded with stated dependencies ... WARNING
Loading required package: methods
Error in paste("... EBImage", packageDescription("EBImage", fields = "Version"), :
could not find function "packageDescription"
Error: .onLoad failed in 'loadNamespace' for 'EBImage'
Execution halted
A namespace must be able to be loaded with just the base namespace loaded:
otherwise if the namespace gets loaded by a saved object, the session will
be unable to start.
Probably some imports need to be declared in the NAMESPACE file.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating EBImage-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating EBImage-manual.tex ... OK
* checking EBImage-manual.tex ... OK
WARNING: There were 2 warnings, see
/loc/biocbuild/2.0d/Rpacks/EBImage.Rcheck/00check.log
for details
* Installing *source* package 'EBImage' ...
checking for Magick++-config... yes
ImageMagick version 6.2.8 found
checking for Magick++-config... yes
ImageMagick++ includes located in -I/usr/local/include
checking for pkg-config... yes
sh: gnome-config: not found
Package gtk+-2.0 was not found in the pkg-config search path.
Perhaps you should add the directory containing `gtk+-2.0.pc'
to the PKG_CONFIG_PATH environment variable
No package 'gtk+-2.0' found
Compiling without GTK+ support
configure: creating ./config.status
config.status: creating src/Makevars
** libs
g++ -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include -I/usr/local/include -I/usr/local/include -D_REENTRANT -pthreads -fPIC -g -O2 -Wall -c alg_watershed.cpp -o alg_watershed.o
alg_watershed.cpp: In function 'SEXPREC* ws_objects(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
alg_watershed.cpp:159: warning: comparison between signed and unsigned integer expressions
alg_watershed.cpp:182: warning: comparison between signed and unsigned integer expressions
alg_watershed.cpp: In function 'void doWatershed(double*, Point&, double, double, std::vector >&, double)':
alg_watershed.cpp:698: warning: unused variable 'nnghb'
g++ -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include -I/usr/local/include -I/usr/local/include -D_REENTRANT -pthreads -fPIC -g -O2 -Wall -c colors.cpp -o colors.o
g++ -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include -I/usr/local/include -I/usr/local/include -D_REENTRANT -pthreads -fPIC -g -O2 -Wall -c common.cpp -o common.o
g++ -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include -I/usr/local/include -I/usr/local/include -D_REENTRANT -pthreads -fPIC -g -O2 -Wall -c conversions.cpp -o conversions.o
g++ -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include -I/usr/local/include -I/usr/local/include -D_REENTRANT -pthreads -fPIC -g -O2 -Wall -c display.cpp -o display.o
g++ -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include -I/usr/local/include -I/usr/local/include -D_REENTRANT -pthreads -fPIC -g -O2 -Wall -c drawables.cpp -o drawables.o
g++ -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include -I/usr/local/include -I/usr/local/include -D_REENTRANT -pthreads -fPIC -g -O2 -Wall -c flt_distmap.cpp -o flt_distmap.o
g++ -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include -I/usr/local/include -I/usr/local/include -D_REENTRANT -pthreads -fPIC -g -O2 -Wall -c flt_magick.cpp -o flt_magick.o
g++ -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include -I/usr/local/include -I/usr/local/include -D_REENTRANT -pthreads -fPIC -g -O2 -Wall -c flt_morph.cpp -o flt_morph.o
g++ -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include -I/usr/local/include -I/usr/local/include -D_REENTRANT -pthreads -fPIC -g -O2 -Wall -c flt_normalize.cpp -o flt_normalize.o
g++ -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include -I/usr/local/include -I/usr/local/include -D_REENTRANT -pthreads -fPIC -g -O2 -Wall -c flt_thresh.cpp -o flt_thresh.o
g++ -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include -I/usr/local/include -I/usr/local/include -D_REENTRANT -pthreads -fPIC -g -O2 -Wall -c indexing.cpp -o indexing.o
g++ -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include -I/usr/local/include -I/usr/local/include -D_REENTRANT -pthreads -fPIC -g -O2 -Wall -c io.cpp -o io.o
g++ -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include -I/usr/local/include -I/usr/local/include -D_REENTRANT -pthreads -fPIC -g -O2 -Wall -c libmain.cpp -o libmain.o
g++ -G -L/usr/local/lib -o EBImage.so alg_watershed.o colors.o common.o conversions.o display.o drawables.o flt_distmap.o flt_magick.o flt_morph.o flt_normalize.o flt_thresh.o indexing.o io.o libmain.o -L/usr/local/lib -L/usr/openwin/lib -R/usr/openwin/lib -L/usr/local/lib -R/usr/local/lib -lfreetype -lz -L/usr/local/lib -lMagick++ -lMagick -lfreetype -ljpeg -lXext -lSM -lICE -lX11 -lsocket -lnsl -lXt -lbz2 -lz -lpthread -lm -lpthread -lWand -lMagick
** R
** inst
** save image
** help
>>> Building/Updating help pages for package 'EBImage'
Formats: text html latex example
Drawable.class text html latex example
Drawable.draw text html latex example
EBImage-package text html latex
Image.class text html latex example
Image.io text html latex example
alg.watershed text html latex example
colors text html latex example
colors.arithm text html latex
flt.distMap text html latex example
flt.magick-colors text html latex example
flt.magick-enhance text html latex example
flt.magick-segment text html latex example
flt.magick-transform text html latex example
flt.magick text html latex
flt.morph text html latex example
flt.morph.mKernel text html latex example
flt.thresh text html latex example
internals text html latex
tools text html latex
updates text html latex
** building package indices ...
* DONE (EBImage)