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Package: snapCGH
Version: 1.0.0
Command: D:\biocbld\R-2.3.0\bin\R.exe CMD build snapCGH
RetCode: 0
Time: 44.5 seconds
Status: OK
PackageFile: snapCGH_1.0.0.tar.gz

Command output

* checking for file 'snapCGH/DESCRIPTION' ... OK
* preparing 'snapCGH':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in D:/biocbld/work-area/1.8d/tmpdir/Rinst438429302


---------- Making package snapCGH ------------
  adding build stamp to DESCRIPTION
  making DLL ...
making optimizer.d from optimizer.c
gcc   -Id:/biocbld/R-2.3.0/include -Wall -O2   -c optimizer.c -o optimizer.o
windres --include-dir d:/biocbld/R-2.3.0/include  -i snapCGH_res.rc -o snapCGH_res.o
gcc  -shared -s  -o snapCGH.dll snapCGH.def optimizer.o snapCGH_res.o  -Ld:/biocbld/R-2.3.0/bin   -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  installing man source files
Warning messages:
1: incomplete final line found by readLines on './man/GEList.Rd' 
2: incomplete final line found by readLines on './man/filter.Rd' 
3: incomplete final line found by readLines on './man/find.param.four.Rd' 
4: incomplete final line found by readLines on './man/find.param.two.Rd' 
5: incomplete final line found by readLines on './man/fitBioHMM.Rd' 
6: incomplete final line found by readLines on './man/removeByWeights.Rd' 
7: incomplete final line found by readLines on './man/runDNAcopy.Rd' 
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'snapCGH'
     Formats: text html latex example chm 
  GEList                            text    html    latex           chm
  LargeDataObject                   text    html    latex   example chm
  SegList                           text    html    latex           chm
  Viterbi.five                      text    html    latex           chm
  Viterbi.four                      text    html    latex           chm
  Viterbi.three                     text    html    latex           chm
  Viterbi.two                       text    html    latex           chm
  cbind                             text    html    latex           chm
  chrominfo.Mb                      text    html    latex           chm
  computeSD                         text    html    latex           chm
  convert.output                    text    html    latex   example chm
  dim                               text    html    latex   example chm
  dimnames                          text    html    latex           chm
  filter                            text    html    latex           chm
  find.param.five                   text    html    latex           chm
  find.param.four                   text    html    latex           chm
  find.param.one                    text    html    latex           chm
  find.param.three                  text    html    latex           chm
  find.param.two                    text    html    latex           chm
  findAberrations                   text    html    latex           chm
  findAmplifications                text    html    latex           chm
  findBreakPoints                   text    html    latex   example chm
  findGenomicEvents                 text    html    latex           chm
  findOutliers                      text    html    latex           chm
  findTranslocations                text    html    latex           chm
  fit.model                         text    html    latex           chm
  fitBioHMM                         text    html    latex           chm
  fitHMM                            text    html    latex           chm
  fractionAltered                   text    html    latex           chm
  genomePlot                        text    html    latex   example chm
  heatmapGenome                     text    html    latex   example chm
  impute.lowess                     text    html    latex   example chm
  log2ratios                        text    html    latex           chm
  mergeStates                       text    html    latex           chm
  mod.chrominfo                     text    html    latex           chm
  non.zero.length.distr.non.tiled   text    html    latex           chm
  non.zero.length.distr.tiled       text    html    latex           chm
  plotGainLoss                      text    html    latex   example chm
  plotSegmentationStates            text    html    latex   example chm
  plotSegmentedGenome               text    html    latex   example chm
  plotSummaryProfile                text    html    latex           chm
  processCGH                        text    html    latex           chm
  read.clonesinfo                   text    html    latex           chm
  removeByWeights                   text    html    latex           chm
  runDNAcopy                        text    html    latex           chm
  runGLAD                           text    html    latex           chm
  sim.structure                     text    html    latex   example chm
  subsetting                        text    html    latex   example chm
  summarize.clones                  text    html    latex           chm
  threshold.func                    text    html    latex   example chm
  zero.length.distr.non.tiled       text    html    latex           chm
  zero.length.distr.tiled           text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\work-area\1.8d\madman\Rpacks\snapCGH\chm\snapCGH.chm





Compile time: 0 minutes, 0 seconds

53	Topics

200	Local links

0	Internet links

1	Graphic





Created d:\biocbld\work-area\1.8d\madman\Rpacks\snapCGH\chm\snapCGH.chm, 78,505 bytes

Compression decreased file by 110,294 bytes.

  preparing package snapCGH for lazy loading

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

  adding MD5 sums

* DONE (snapCGH)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'snapCGH_1.0.0.tar.gz'