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Package 68/172OSArchBUILDCHECKBUILD BIN

goCluster

1.6.0

Gunnar Wrobel
Linux (SUSE 9.2) x86_64 OK  OK 
Linux (SUSE 9.2) i686 OK  OK 
Solaris 2.9 sparc ERROR skipped
Linux (SUSE 10.0) x86_64 OK  OK 
Windows Server 2003 x86_64 OK [ OK ] OK 
Package: goCluster
Version: 1.6.0
Command: D:\biocbld\1.8d\R\bin\R.exe CMD check goCluster_1.6.0.tar.gz
RetCode: 0
Time: 457.7 seconds
Status: OK
CheckDir: goCluster.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory 'D:/biocbld/1.8d/Rpacks/goCluster.Rcheck'
* using Version 2.3.1 (2006-06-01)
* checking for file 'goCluster/DESCRIPTION' ... OK
* this is package 'goCluster' version '1.6.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'goCluster' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for library.dynam ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking Rd files ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating goCluster-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating goCluster-manual.tex ... OK
* checking goCluster-manual.tex ... OK

goCluster.Rcheck/00install.out:

installing R.css in D:/biocbld/1.8d/Rpacks/goCluster.Rcheck


---------- Making package goCluster ------------
  adding build stamp to DESCRIPTION
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'goCluster'
     Formats: text html latex example chm 
  benomylsetup                      text    html    latex   example chm
  checkData                         text    html    latex   example chm
  checkProtection                   text    html    latex   example chm
  checkannotationpackage            text    html    latex   example chm
  clusterAlgorithm-class            text    html    latex           chm
  clusterAlgorithmClara-class       text    html    latex   example chm
  clusterAlgorithmHclust-class      text    html    latex   example chm
  clusterAlgorithmKmeans-class      text    html    latex   example chm
  clusterAlgorithmPam-class         text    html    latex   example chm
  clusterAnnotation-class           text    html    latex           chm
  clusterAnnotationChromosome-abp-c text    html    latex   example chm
  clusterAnnotationGO-abp-class     text    html    latex   example chm
  clusterAnnotationLookup           text    html    latex   example chm
  clusterData-class                 text    html    latex           chm
  clusterModule-class               text    html    latex           chm
  clusterSignif-class               text    html    latex           chm
  clusterSignifBase-class           text    html    latex   example chm
  clusterSignifBonferroni-class     text    html    latex   example chm
  clusterSignifFDR-class            text    html    latex   example chm
  clusterStatistic-class            text    html    latex           chm
  clusterStatisticHyper-class       text    html    latex           chm
  clusterVisual-class               text    html    latex           chm
  clusterVisualHclust-class         text    html    latex   example chm
  clusterVisualHeatmap-class        text    html    latex   example chm
  clusterVisualNone-class           text    html    latex   example chm
  clusterclara                      text    html    latex   example chm
  clusterhclust                     text    html    latex   example chm
  clusterkmeans                     text    html    latex   example chm
  clusterpam                        text    html    latex   example chm
  collectTerms                      text    html    latex   example chm
  config-methods                    text    html    latex   example chm
  display-methods                   text    html    latex   example chm
  evalClusterHyper                  text    html    latex   example chm
  execute-assign-methods            text    html    latex   example chm
  execute-methods                   text    html    latex   example chm
  getChildrenClasses                text    html    latex   example chm
  getGeneColors                     text    html    latex   example chm
  goCluster-class                   text    html    latex   example chm
  groupCount                        text    html    latex   example chm
  mergeResult                       text    html    latex   example chm
  minimizeSelection                 text    html    latex   example chm
  plotAxis                          text    html    latex           chm
  prepareAxis                       text    html    latex   example chm
  prepareCHRannotation              text    html    latex   example chm
  prepareGOannotation               text    html    latex   example chm
  prepareHeatmap                    text    html    latex   example chm
  printData                         text    html    latex   example chm
  reset-methods                     text    html    latex   example chm
  selectAnnoStats                   text    html    latex   example chm
  selectChild                       text    html    latex   example chm
  selectCore                        text    html    latex   example chm
  selectDouble                      text    html    latex   example chm
  selectNumber                      text    html    latex   example chm
  selectOption                      text    html    latex   example chm
  selectStats                       text    html    latex   example chm
  selectStatsBonferroni             text    html    latex   example chm
  selectTerms                       text    html    latex   example chm
  setup-assign-methods              text    html    latex   example chm
  setup-methods                     text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\1.8d\Rpacks\goCluster.Rcheck\00_pkg_src\goCluster\chm\goCluster.chm


Compile time: 0 minutes, 0 seconds
60	Topics
463	Local links
58	Internet links
1	Graphic


Created d:\biocbld\1.8d\Rpacks\goCluster.Rcheck\00_pkg_src\goCluster\chm\goCluster.chm, 87,177 bytes
Compression decreased file by 195,776 bytes.
  preparing package goCluster for lazy loading

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Creating a new generic function for 'print' in 'goCluster'
  adding MD5 sums

* DONE (goCluster)