Back to the "Multiple platform build/check report"

Package 23/172OSArchBUILDCHECKBUILD BIN

Biobase

1.10.1

Biocore Team
Linux (SUSE 9.2) x86_64 OK  WARNINGS 
Linux (SUSE 9.2) i686 OK  WARNINGS 
Solaris 2.9 sparc OK  WARNINGS 
Linux (SUSE 10.0) x86_64 OK  WARNINGS 
Windows Server 2003 x86_64 OK [ WARNINGS ] OK 
Package: Biobase
Version: 1.10.1
Command: D:\biocbld\1.8d\R\bin\R.exe CMD check Biobase_1.10.1.tar.gz
RetCode: 0
Time: 69.5 seconds
Status: WARNINGS
CheckDir: Biobase.Rcheck
Warnings: 1

Command output

* checking for working latex ... OK
* using log directory 'D:/biocbld/1.8d/Rpacks/Biobase.Rcheck'
* using Version 2.3.1 (2006-06-01)
* checking for file 'Biobase/DESCRIPTION' ... OK
* this is package 'Biobase' version '1.10.1'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'Biobase' can be installed ... WARNING
Found the following significant warnings:
  Warning: 'eset' is deprecated.
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for library.dynam ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking Rd files ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* creating Biobase-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating Biobase-manual.tex ... OK
* checking Biobase-manual.tex ... OK

WARNING: There was 1 warning, see
  D:/biocbld/1.8d/Rpacks/Biobase.Rcheck/00check.log
for details

Biobase.Rcheck/00install.out:

installing R.css in D:/biocbld/1.8d/Rpacks/Biobase.Rcheck


---------- Making package Biobase ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making Rinit.d from Rinit.c
making envir.d from envir.c
making matchpt.d from matchpt.c
gcc   -Id:/biocbld/1.8d/R/include -Wall -O2   -c Rinit.c -o Rinit.o
gcc   -Id:/biocbld/1.8d/R/include -Wall -O2   -c envir.c -o envir.o
gcc   -Id:/biocbld/1.8d/R/include -Wall -O2   -c matchpt.c -o matchpt.o
windres --include-dir d:/biocbld/1.8d/R/include  -i Biobase_res.rc -o Biobase_res.o
gcc  -shared -s  -o Biobase.dll Biobase.def Rinit.o envir.o matchpt.o Biobase_res.o  -Ld:/biocbld/1.8d/R/bin   -lR
  ... DLL made
  installing DLL
  installing R files
  save image
Loading required package: tools
Creating a new generic function for 'nrow' in 'Biobase'
Creating a new generic function for 'ncol' in 'Biobase'
  installing inst files
  installing data files
  installing man source files
  installing indices
Warning: 'eset' is deprecated.
Use 'sample.exprSet.1' instead.
See help("Deprecated")
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'Biobase'
     Formats: text html latex example chm 
  Aggregate                         text    html    latex   example chm
  Biobase-package                   text    html    latex           chm
  abstract                          text    html    latex           chm
  addVig2Menu                       text    html    latex   example chm
  annotation                        text    html    latex           chm
  assayData                         text    html    latex           chm
  biocReposList                     text    html    latex   example chm
  cache                             text    html    latex   example chm
  class.AnnotatedDataFrame          text    html    latex           chm
  class.AssayData                   text    html    latex           chm
  class.ExpressionSet               text    html    latex   example chm
  class.MIAME                       text    html    latex           chm
  class.MultiSet                    text    html    latex   example chm
  class.SnpSet                      text    html    latex           chm
  class.aggregator                  text    html    latex           chm
  class.annotatedDataset            text    html    latex           chm
  class.characterORmiame            text    html    latex           chm
  class.container                   text    html    latex   example chm
  class.eSet                        text    html    latex   example chm
  class.exprList                    text    html    latex   example chm
  class.exprMatrix                  text    html    latex           chm
  class.exprSet                     text    html    latex   example chm
  class.phenoData                   text    html    latex   example chm
  combine                           text    html    latex           chm
  contents                          text    html    latex   example chm
  copyEnv                           text    html    latex   example chm
  copySubstitute                    text    html    latex   example chm
  createPackage                     text    html    latex   example chm
  data.aaMap                        text    html    latex   example chm
  data.eset                         text    html    latex   example chm
  data.geneData                     text    html    latex   example chm
  data.reporter                     text    html    latex   example chm
  data.sample.ExpressionSet         text    html    latex   example chm
  data.sample.eSet                  text    html    latex   example chm
  data.sample.exprSet.1             text    html    latex   example chm
  data.sample.exprSet               text    html    latex   example chm
  defunct                           text    html    latex           chm
  description                       text    html    latex           chm
  dims                              text    html    latex           chm
  dumpPackTxt                       text    html    latex   example chm
  esApply                           text    html    latex   example chm
  exprs                             text    html    latex           chm
  featureNames                      text    html    latex           chm
  getPkgVigs                        text    html    latex   example chm
  internals                         text    html    latex           chm
  isUnique                          text    html    latex   example chm
  matchpt                           text    html    latex   example chm
  multiassign                       text    html    latex   example chm
  note                              text    html    latex   example chm
  notes                             text    html    latex           chm
  openPDF                           text    html    latex   example chm
  openVignette                      text    html    latex   example chm
  package.version                   text    html    latex   example chm
  phenoData                         text    html    latex           chm
  read.MIAME                        text    html    latex   example chm
  read.exprSet                      text    html    latex   example chm
  read.phenoData                    text    html    latex   example chm
  reporterInfo                      text    html    latex           chm
  reverseSplit                      text    html    latex   example chm
  rowQ                              text    html    latex   example chm
  storageMode                       text    html    latex           chm
  strbreak                          text    html    latex   example chm
  testBioCConnection                text    html    latex   example chm
  updateOldESet                     text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\1.8d\Rpacks\Biobase.Rcheck\00_pkg_src\Biobase\chm\Biobase.chm


Compile time: 0 minutes, 0 seconds
65	Topics
570	Local links
5	Internet links
1	Graphic


Created d:\biocbld\1.8d\Rpacks\Biobase.Rcheck\00_pkg_src\Biobase\chm\Biobase.chm, 99,759 bytes
Compression decreased file by 198,980 bytes.
  adding MD5 sums

* DONE (Biobase)