* using log directory 'C:/R/biocbld/1.7/build-area/buildSandbox/checkOutput/MANOR.Rcheck' * using R version 2.2.0, 2005-10-10 * checking for file 'MANOR/DESCRIPTION' ... OK * this is package 'MANOR' version '1.2.0' * checking if this is a source package ... OK * checking whether package 'MANOR' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking package dependencies ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for syntax errors ... OK * checking R files for library.dynam ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking Rd files ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking for CRLF line endings in C/C++/Fortran sources/headers ... OK * creating MANOR-Ex.R ... OK * checking examples ... ERROR Running examples in MANOR-Ex.R failed. The error most likely occurred in: > ### * genome.plot > > flush(stderr()); flush(stdout()) > > ### Name: genome.plot > ### Title: Display a pan-genomic representation of a normalized arrayCGH > ### Aliases: genome.plot genome.plot.default genome.plot.arrayCGH > > > ### ** Examples > > data(spatial) > > ## default color code: log-ratios > genome.plot(edge.norm, chrLim="LimitChr") > > ## color code determined by a qualitative variable: ZoneGNL (DNA copy number code) > edge.norm$cloneValues$ZoneGNL <- as.factor(edge.norm$cloneValues$ZoneGNL) > genome.plot(edge.norm, col.var="ZoneGNL") Error in plot.new() : figure margins too large Execution halted