* using log directory 'D:/biocbld/auto-build-work-area/bioc-1.7/buildSandbox/checkOutput/sagenhaft.Rcheck' * using R version 2.2.0, 2005-10-10 * checking for file 'sagenhaft/DESCRIPTION' ... OK * this is package 'sagenhaft' version '1.2.0' * checking if this is a source package ... OK * checking whether package 'sagenhaft' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking package dependencies ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for syntax errors ... OK * checking R files for library.dynam ... OK * checking S3 generic/method consistency ... WARNING simulate: function(object, nsim, seed, ...) simulate.library: function(taglength, lambda, mean.error, error.sd, withintagerror.sd, ngenes, base.lib, libseed, ...) See section 'Generic functions and methods' of the 'Writing R Extensions' manual. * checking replacement functions ... OK * checking foreign function calls ... OK * checking Rd files ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * creating sagenhaft-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating sagenhaft-manual.tex ... OK * checking sagenhaft-manual.tex ... OK