* using log directory 'D:/biocbld/auto-build-work-area/bioc-1.7/buildSandbox/checkOutput/SBMLR.Rcheck' * using R version 2.2.0, 2005-10-10 * checking for file 'SBMLR/DESCRIPTION' ... OK * this is package 'SBMLR' version '1.24.0' * checking if this is a source package ... OK * checking whether package 'SBMLR' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking package dependencies ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for syntax errors ... OK * checking R files for library.dynam ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking Rd files ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * creating SBMLR-Ex.R ... OK * checking examples ... ERROR Running examples in SBMLR-Ex.R failed. The error most likely occurred in: > ### * simulate > > flush(stderr()); flush(stdout()) > > ### Name: simulate > ### Title: Simulate a model of class SBML > ### Aliases: simulate > ### Keywords: math > > ### ** Examples > > ##---- The following example performs a perturbation in PRPP from 5 to 50 uM in Curto et al.'s model. > library(SBMLR) > library(odesolve) > curto=readSBML(file.path(.path.package("SBMLR"), "models/curto.xml")) > out1=simulate(curto,seq(-20,0,1)) Warning: intdy-- t (=r1) illegal Warning: t not in interval tcur - hu (= r1) to tcur (=r2) Warning: intdy-- t (=r1) illegal Warning: t not in interval tcur - hu (= r1) to tcur (=r2) Warning: lsoda-- trouble from intdy. itask = i1, tout = r1 Error in lsoda(y = y0, times = times, fderiv, parms = c(mod = mod), rtol = 1e-04, : Illegal input to lsoda Execution halted