* using log directory '/extra/loc/biocbuild/build-area/bioc-1.7/buildSandbox/checkOutput/annotate.Rcheck' * using R version 2.2.0, 2005-10-07 * checking for file 'annotate/DESCRIPTION' ... OK * this is package 'annotate' version '1.8.0' * checking if this is a source package ... OK * checking whether package 'annotate' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking package dependencies ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for syntax errors ... OK * checking R files for library.dynam ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking Rd files ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * creating annotate-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... WARNING *** Weave Errors *** File /extra/loc/biocbuild/build-area/bioc-1.7/buildSandbox/checkOutput/annotate.Rcheck/annotate/doc/useProbeInfo.Rnw : Error: chunk 3 (label=getACC) Error in file(con, "r") : unable to open connection *** Source Errors *** File /extra/loc/biocbuild/build-area/bioc-1.7/buildSandbox/checkOutput/annotate.Rcheck/annotate/doc/useProbeInfo.R : Error in file(con, "r") : unable to open connection * creating annotate-manual.tex ... OK * checking annotate-manual.tex ... OK